Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1661 ATGGAAAGTGGGTGGAAGCCTGAGGTTGAGATGTCACCAAATTGCCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGCAATGTGCCTGTCGGAGGTGGCTGCAAGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAAACTCGTCGCCACCTTGTGGCTATGCCACAGATCACAATAATAACCCTTTAGGGCATTCTTATGATCCTAGAATAAGGGCTTCTTCAGCTTCTAGCTCCTCCTCAGTAGTGACTGATGGACCTAACATTGATCTTGCTCTAGTTTTTGCAAATTTCCTTAACCAAAAGCCCAATAGTTCTGAAGGTGGGGTTGAGAGTAGTACTAATCCAGATCAAGAGCAAACAGTTTTTGATCCTTCTCTAGAAAACAATTCAAGGCTATCAAACACAGATGTTGTTGGTCCAAGTACTTTGCCTGAAGAACTTGGTCTCACTGGGTGTTTGAATCTTCCTGAACAACAACCACACACACATTCTAGTGAGGCTAATAATAACAATAACCAAATGTGCTATGGTGAGTTCAACACTATGCAGACACTTCAAAAAGATGGAATTGAGCAATACAGTAGTCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCGGGTGAAGGGGAAGCCTCACATGATCATCACATGATGTGGTCGAATTCTGAGATGATGATAAATCATCATGCATTTCAAGTCACACAACCTCCACTACTTGGACTTGAAGTTCATGATGCAGACTTATTAATAGGTAATTGGAGCCCCTTTGATTCGCCAAAGGATACTTCTTTTTCCAGGCCTTGA 924 0.4307 MESGWKPEVEMSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCKKNRRGNKTLLRQSIDGFTFKNSSPPCGYATDHNNNPLGHSYDPRIRASSASSSSSVVTDGPNIDLALVFANFLNQKPNSSEGGVESSTNPDQEQTVFDPSLENNSRLSNTDVVGPSTLPEELGLTGCLNLPEQQPHTHSSEANNNNNQMCYGEFNTMQTLQKDGIEQYSSHGGAMNFELPPLPGEGEASHDHHMMWSNSEMMINHHAFQVTQPPLLGLEVHDADLLIGNWSPFDSPKDTSFSRP* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1661 307 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Gso2g1661 307 MobiDBLite consensus disorder prediction 141 181 - -
Gso2g1661 307 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Gso2g1661 307 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 303 - -
Gso2g1661 307 Pfam Dof domain, zinc finger 13 67 IPR003851 GO:0003677|GO:0006355
Gso2g1661 307 MobiDBLite consensus disorder prediction 141 178 - -
Gso2g1661 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 303 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1661 Gso-Chr2 39157071 39157994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1661 5 301 C2C2-Dof Transcription Factor Family AT3G52440 37.299 2.26e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso2g1661 zf-Dof 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1661 - - gmx:100794208 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1661 2 39157071 39157994 Gso10g0719 10 9955358 9956712 GST
Gso19g1679 19 45709055 45710023 Gso2g1661 2 39157071 39157994 PCT
Gso2g1661 2 39157071 39157994 Gso19g1679 19 45709055 45710023 PCT