Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1382 ATGATGCATCGTCAGATTGAGATGGAGAATTCTGAGCTCTTCCAATTCCTCACAAACACCAACGATGCTTTCTTCAACACTGCATCATATGGCCTCCCTGCGGCACCTGCAGCATCAACCATGCAGCACAGCTTCTCTGGCTCCTTTTCTTATTACCCTTTGGAAGCATCTCATGATCATCATGCCCCTTCTCATGAAGACAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACTCCCACCTCGATAAGCTTCGCACCCTTCTTCCTTGCAATTCCAAGACGGACAAGGCTTCCCTTCTTGCCAAGGTGGTCCAACGGGTGAGGGAGTTGAAGCAGCAAATATCCTCACTATCCGATTCCGAAGCGTTTCCGTCGGAGACAGATGAGGTCTCCGTCTTGTCCACCAGCGGTGACAACGACGACCACGGTGGTTGTGACGACAATGACGGACGCCTCATATTCAAGGCCTCTCTGTGCTGCGAGGACCGCTCCGATCTCATCCCCGAGCTCATCGAAATCCTGAGGTCTCTGCGCCTGAAAACGCTCAAGGCCGAAATGGCCACGCTCGGAGGAAGAACCCGCAACGTTCTCGTGGTGGCCACGGATAAAGACCATAGCGGTGAATCGATCCAGTTTCTGCAGAACTCGCTGAAGTCTCTGGTGGAACGCTCCAGTAATTCCAACGACAGATCCAAACGGCGCCGTGTCCTAGACCGAAAGTTCATTGCTTAA 762 0.521 MMHRQIEMENSELFQFLTNTNDAFFNTASYGLPAAPAASTMQHSFSGSFSYYPLEASHDHHAPSHEDKALAALRNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQISSLSDSEAFPSETDEVSVLSTSGDNDDHGGCDDNDGRLIFKASLCCEDRSDLIPELIEILRSLRLKTLKAEMATLGGRTRNVLVVATDKDHSGESIQFLQNSLKSLVERSSNSNDRSKRRRVLDRKFIA* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1382 253 Gene3D - 73 140 IPR036638 GO:0046983
Gso2g1382 253 Coils Coil 110 130 - -
Gso2g1382 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 131 IPR036638 GO:0046983
Gso2g1382 253 PANTHER TRANSCRIPTION FACTOR BHLH30 9 252 IPR045847 GO:0003700|GO:0006355
Gso2g1382 253 MobiDBLite consensus disorder prediction 233 253 - -
Gso2g1382 253 MobiDBLite consensus disorder prediction 128 152 - -
Gso2g1382 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Gso2g1382 253 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Gso2g1382 253 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 9 252 - -
Gso2g1382 253 CDD bHLH_AtAIG1_like 66 142 - -
Gso2g1382 253 MobiDBLite consensus disorder prediction 128 148 - -
Gso2g1382 253 MobiDBLite consensus disorder prediction 235 253 - -
Gso2g1382 253 SMART finulus 77 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1382 Gso-Chr2 23455404 23457495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1382 51 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 67.368 1.65e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1382 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1382 - K22484 gmx:100790009 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1078 19 38730200 38732345 Gso2g1382 2 23455404 23457495 PCT
Gso3g1081 3 35911832 35913541 Gso2g1382 2 23455404 23457495 PCT
Gso2g1382 2 23455404 23457495 Gso19g1078 19 38730200 38732345 PCT
Gso2g1382 2 23455404 23457495 Gso3g1081 3 35911832 35913541 PCT