Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1078 ATGATGCCCCCTCAGCAAGAAACCTCTATTACATCAAACATTCCGGCCATCCCCAACCGGCCGGAAAACAGCTACGTCCATGCCGAACCACCGAGCTCCGCCACCAACGACATTAAACCCACTTTCACGAGCAATGACATTCACAACAATAATTCTTCTCAGCACCACCAAGCAGCTCCTTCAGCACCCAGATTTTCTGTTCTTCAGCAATCCTTGCGCCCTGTTACCCTCAAATTTGAGGATGTTTCCTACAGCATAACCTTTGGAAGGGACAAAAATGGTTGTGTATCTTCTCAAAAGCCAAAGCACACAAAGACAGTGCTGAATGGCGTGACCGGTATGGTGGGGCCAAGGGAGGTGATGGCAATGTTAGGTCCCTCCGGGAGCGGCAAGACCACCTTACTCACCGCCCTTGCTGGCCGTCTTGCCGGAAAACTCTCCGGCGCCATCACATACAATGGCCACCCTTTCTCCAGCTCCATGAAGAGGAACATAGGGTTTGTATCCCAAGATGACGTGTTATATCCTCACCTCACTGTGCTTGAGACTCTAACCTATGCTGCCATGTTGAAACTTCCCAAAAGTTTGACTAGGGAAGATAAAATGGAGCAAGCTGAAATGATCATTGTGGAACTAGGGCTGTCCCGGTGCCGGAACAGTCCTATTGGCGGTGGATCTGCCTTGTTCCGAGGAATTTCAGGCGGGGAGCGAAAGCGGGTCAGTATCGGGCAAGAAATGTTGGTGAACCCGAGTTTGTTGTTGCTCGATGAGCCAACATCCGGGTTGGACTCCACCACGGCCCAGCGCATCGTGGCGATGCTTCAAAGCTTCGCCCGAGCTGGCCGGACCGTGGTGACCACCATTCACCAGCCCTCAAGCCGGTTGTATTGGATGTTTGATAAGGTGGTGGTGTTGTCGGACGGGTATCCGATTTTCACCGGAAAAACGGATCGGGTCATGGATTATCTTGAGACCGTTGGGTTTGTACCCGCTTTCAATTTCGTCAACCCGGCTGATTTTCTGCTTGACCTTGCTAATGGCATAGTTGCTGATGTCAAACAAGAAGAGCAGATAGATCACCATGAGGATCAAGCTTCAATCAAACAGTTCCTAGTTTCATCCTATAAGAAGAACTTATACCCTCTTCTGAAACAAGAGATTCAACAGAATCATAGAGAACTAGCATTTTTAAATTCAGGAACACCTAGAAGTTCTGAGAACCAATGGACCACTAGCTGGTGGGAGCAATTCATGGTTCTGCTTAAGAGGGGTTTAAAGGAAAGGAGGCATGAATCTTATTCTGGTTTAAGGATTTTCCAAGTCTTGTCTGTCTCAATTCTCTCAGGACTTCTGTGGTGGCATTCTGATCCCTCACATATACAAGATCAGGTAGGCCTGCTATTCTTCTTCTCCATCTTCTGGGGGTTCTTCCCTCTCTTCAATGCCATCTTCGCTTTTCCTTTGGACCGGCCAATGCTGACGAAAGAAAGATCATCAGGCATGTACCATCTCTCCTCCTACTATGTGGCCAGAACGGTAGGGGACTTACCAATGGAGCTTGTGCTTCCCACCATCTTTGTAACCATCTCTTATTGGATGGGTGGACTCAAGCCTTCTTTGGTTACGTTTGTGTTGACACTCTTGATCATGCTTTTCAATGTGCTGGTTTCTCAAGGAATAGGCCTTGCACTTGGAGCCCTTCTAATGGATGTGAAACAGGCCACAACATTAGCTTCAGTGACTATGTTGGTGTTTCTTTTGGCTGGAGGTTACTACATTCAGCAAATTCCATTCTTTATAGCTTGGTTGAAGTACATTTCTTTCAGTCACTATTGTTATAAGCTTCTTGTAGGAGTTCAGTACTCAGTAAATGAGGTCTATGAGTGTGGACAAGGGTTGTTGCATTGTAAGAGTTGTGGCTTATTTAGCTTTGAGGATGGGGCTGCATCATTGACTAGAGACTGCATAGTAGATCAAGGATTCATGGCCATAATATTGATTGACATCCTTGTTGTTTGGATCATTGGCCTCAGTAGAAGGGTAATTCGATTCTAG 2055 0.4701 MMPPQQETSITSNIPAIPNRPENSYVHAEPPSSATNDIKPTFTSNDIHNNNSSQHHQAAPSAPRFSVLQQSLRPVTLKFEDVSYSITFGRDKNGCVSSQKPKHTKTVLNGVTGMVGPREVMAMLGPSGSGKTTLLTALAGRLAGKLSGAITYNGHPFSSSMKRNIGFVSQDDVLYPHLTVLETLTYAAMLKLPKSLTREDKMEQAEMIIVELGLSRCRNSPIGGGSALFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLQSFARAGRTVVTTIHQPSSRLYWMFDKVVVLSDGYPIFTGKTDRVMDYLETVGFVPAFNFVNPADFLLDLANGIVADVKQEEQIDHHEDQASIKQFLVSSYKKNLYPLLKQEIQQNHRELAFLNSGTPRSSENQWTTSWWEQFMVLLKRGLKERRHESYSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLTKERSSGMYHLSSYYVARTVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGALLMDVKQATTLASVTMLVFLLAGGYYIQQIPFFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGQGLLHCKSCGLFSFEDGAASLTRDCIVDQGFMAIILIDILVVWIIGLSRRVIRF* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1078 684 MobiDBLite consensus disorder prediction 26 63 - -
Gso2g1078 684 Gene3D - 77 326 IPR027417 -
Gso2g1078 684 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 332 IPR003439 GO:0005524
Gso2g1078 684 Pfam ABC-2 type transporter 289 355 IPR043926 GO:0140359
Gso2g1078 684 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 45 679 - -
Gso2g1078 684 MobiDBLite consensus disorder prediction 1 19 - -
Gso2g1078 684 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 45 679 - -
Gso2g1078 684 SMART AAA_5 117 310 IPR003593 -
Gso2g1078 684 MobiDBLite consensus disorder prediction 1 63 - -
Gso2g1078 684 CDD ABCG_EPDR 74 314 - -
Gso2g1078 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 326 IPR027417 -
Gso2g1078 684 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524
Gso2g1078 684 Pfam ABC-2 type transporter 415 621 IPR013525 GO:0016020|GO:0140359
Gso2g1078 684 Pfam ABC transporter 108 260 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1078 Gso-Chr2 13204715 13209807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1078 107 319 Calmodulin-binding Proteins AT2G36910 30.455 1.41e-12 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1078 2 13204715 13209807 Gso2g1078 2 13204715 13209807 ECH
Gso1g0765 1 26857133 26862776 Gso2g1078 2 13204715 13209807 GST