Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1008 ATGGGAAGAGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAAATATCTGTACTCTGTGATGCTGAGGTAGCTTTGATTATCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCTACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAGACACAGGAAAACTGGACCATTGAATACACTAGACTGAAGGCAAAAATTGACCTTTTACAGAGAAACCACAGGCACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTGGATACTGGTATCAAAAACATCCGCACAAGGAGGAATGATCTCATGTCCGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGAGGAGAATAACACCCTTGCAAAGAAGATCAAGGAGAAAGAGCAGGCTGTAGCACAGCAAGCTGCACAATGGGAGCAGCCAAACTACAGGGTTGATACATCTTTCATGCCACAGCAGCAACCCCTTCCCACCAGTTTGAACATATGTGGCAATAATTACTGCCAGGAAGCTGCACCAGAACTAGGAAGGAACGGTCTAGACCTGACCCTGGAACCACTCTATTCTTGCAACCTTGGATGCTTCTGA 732 0.4495 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQENWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLDTGIKNIRTRRNDLMSESISELQKKEKRIQEENNTLAKKIKEKEQAVAQQAAQWEQPNYRVDTSFMPQQQPLPTSLNICGNNYCQEAAPELGRNGLDLTLEPLYSCNLGCF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1008 243 Coils Coil 144 185 - -
Gso2g1008 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gso2g1008 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso2g1008 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Gso2g1008 243 Coils Coil 88 108 - -
Gso2g1008 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g1008 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gso2g1008 243 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Gso2g1008 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso2g1008 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso2g1008 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso2g1008 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso2g1008 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso2g1008 243 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g1008 243 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 213 - -
Gso2g1008 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1008 Gso-Chr2 11879822 11884196 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso2g1008 K-box 9.9e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1008 2 11879822 11884196 Gso2g1008 2 11879822 11884196 ECH
Gso1g0543 1 9596913 9601577 Gso2g1008 2 11879822 11884196 GST