Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0968 ATGATGATGTCGTATCAATCAATGGAGGAGACGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGTAAGTCTCTGGGTGGCCACATCAGAACTCACATGATGAGTAGTGAGCATCATCATTCAGCTTTAGCCAACAATGAAGAGAGGAACAACAACAACAACAATGCTGCTAATGCTATGTTCAAGTTTGATGGTGGGAGAAAGAAGAAGAGGGATTTGGGGTCTGAAGAAAATGGGAACAACAACAATTATGGTCTCAGAGAGAACCCCAAGAAGACCACTAGGTTTGTGCACTCCAATGCCACTTTGCAACTTGACAAGTTCTGCAAAGAATGTGGGAAGGGTTTCCCATCACTGAAGGCTCTTTGTGGCCACATGGCTTGTCACTCTGAAAAGGACAAGGGAGGTTTTGCTACTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGACACCGAAACTTCTTCTGCTCCTAGGAGGTCCAAGAGAATGAAGTCCAAAACCCTTAGCAGCAGCAACAACAACAACAACAACCAACCTCAATCTTCTTCTGTGTCAGAGGTTGAGCAGGAGCAAGAAGAGCTGGCTAGGTGCTTGATGATGTTGTCTAAAGATTCTAGCTACAAGGGTCGTTTTGCTTTGCTTACAGAGTCTTCTGACAACAACTCGGTTGTAATTACAAAGTCACCTTCTCTTGAAACCAAGGTTACTACTATGATGAATGTTTATGGCAAGAATTCTATGGAGAGGAAGCTGGAGTTGGAGCAGCACAAGGACTTGAAGTTTAAGTCTGTTGAAGTTGGCTATGATTCAGACAATTCAGATTCTGGGTATTTCAGATATGGTCCTAAGTCGGATGAATCAAATGATGAGTTTTTCAGGAATGAGGTAAAGTCTTCGAAAGTTGGGTACTTGAATGGTTTTGATCAGGAGTATGATGTTGTTGAATCGAGGAAGGTGCTGAGCAGGGGAAGAAGCAGGAGCAGTGAATTTAAGAAATTTGTTTTGGAGGATTGGGAGAGTTATGATAGAGAGGATGGTGATGTGGCTGCAAGGAAATTTGGTTCAAAGAAATTCAAGAAGTCCAACTACGATGATGATTCTCTTGGTCAAAACTTAGGTGGGGTTTCTACTAGGAAGTATGAGTGCTTGACTAGTGAAAGGTACAATGGTTGTTCTGATGATTCTGCTTATGAGAGTGATGAGAACAGCACAGACACTGATTCTTATCCTGCTCCAAAGGCTCATCATAGCAACAGGAACAACCTCAGTGGCAATAAGGGGAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGCACATGAGTGTCCAATTTGCAACAAGATTTTCAGGTCAGGCCAAGCTTTGGGGGGTCACAAAAGATCCCATTTTATTGGAGGTTCTGAGGAAAACACACTTGTGATAAGGCCAAGTGCTCCTCCTGCTGCTGTGCCTTGCCTCATTGATCTCAATCTACCAGCACCTGTTGATGAATAG 1506 0.4309 MMMSYQSMEETRKFVCKYCSKRFPCGKSLGGHIRTHMMSSEHHHSALANNEERNNNNNNAANAMFKFDGGRKKKRDLGSEENGNNNNYGLRENPKKTTRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKDKGGFATEKQKLVMDSQSDTETSSAPRRSKRMKSKTLSSSNNNNNNQPQSSSVSEVEQEQEELARCLMMLSKDSSYKGRFALLTESSDNNSVVITKSPSLETKVTTMMNVYGKNSMERKLELEQHKDLKFKSVEVGYDSDNSDSGYFRYGPKSDESNDEFFRNEVKSSKVGYLNGFDQEYDVVESRKVLSRGRSRSSEFKKFVLEDWESYDREDGDVAARKFGSKKFKKSNYDDDSLGQNLGGVSTRKYECLTSERYNGCSDDSAYESDENSTDTDSYPAPKAHHSNRNNLSGNKGKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPSAPPAAVPCLIDLNLPAPVDE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0968 501 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Gso2g0968 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Gso2g0968 501 SMART c2h2final6 14 36 IPR013087 -
Gso2g0968 501 SMART c2h2final6 111 133 IPR013087 -
Gso2g0968 501 SMART c2h2final6 444 466 IPR013087 -
Gso2g0968 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 444 466 IPR013087 -
Gso2g0968 501 MobiDBLite consensus disorder prediction 398 426 - -
Gso2g0968 501 MobiDBLite consensus disorder prediction 81 95 - -
Gso2g0968 501 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 8 501 - -
Gso2g0968 501 MobiDBLite consensus disorder prediction 427 441 - -
Gso2g0968 501 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Gso2g0968 501 SUPERFAMILY beta-beta-alpha zinc fingers 112 466 IPR036236 -
Gso2g0968 501 MobiDBLite consensus disorder prediction 50 95 - -
Gso2g0968 501 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 8 501 - -
Gso2g0968 501 ProSitePatterns Zinc finger C2H2 type domain signature. 446 466 IPR013087 -
Gso2g0968 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 41 IPR013087 -
Gso2g0968 501 MobiDBLite consensus disorder prediction 171 193 - -
Gso2g0968 501 MobiDBLite consensus disorder prediction 398 443 - -
Gso2g0968 501 Pfam C2H2-type zinc finger 14 37 - -
Gso2g0968 501 Pfam C2H2-type zinc finger 443 466 - -
Gso2g0968 501 Pfam C2H2-type zinc finger 113 135 - -
Gso2g0968 501 MobiDBLite consensus disorder prediction 144 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0968 Gso-Chr2 11245928 11248620 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g0968 zf-C2H2_6 1e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0968 2 11245928 11248620 Gso2g0968 2 11245928 11248620 ECH