Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0912 ATGTCTGAGGTTGTTACTAAAGACTCTGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGTCACGCAACAACAACAACAACAACAACAACAACAACAACAACGAGGTTTCTTCTTCTGCTAATGGTTTTTCTTCTGATGAACCTGCTCCTCCTGAAGATTCATCTTCATCTTTTCCACGTGAAGTGAGCTCCACAACGGAACATGAAGCTGGGAGGGATAAGGAACCATCAAGGAAAGAACTCACCTCGGCACAAGAAGAAGACGAGGAGGCCTCACATCAAACCATAGAGGAACCAAAATCTCCAACATCATCTTCATGCAATCTTGAGAACCCCAAGACCCCTTCAACAGAAAGAGAAACTTCCATACTGAAATCTTCCAAAACCGGAGACCAAAGCGACGCAACAACAACAAGTCCATCACAGGACAAAACTCTAAAGAAACCAGACAAGGTGCTTCCATGCCCACGCTGCAATAGCATGGACACAAAGTTCTGCTACTACAACAACTACAACGTGAACCAACCGCGCCATTTCTGCAAGAACTGCCAGAGATATTGGACCGCCGGAGGAACCATGAGGAACGTGCCGGTGGGTGCAGGCCGCCGTAAGAACAAGAACACTCCCTCTTCTCTGTCGCATTTTCGCCAGATCATGGTTCCTGAGGGCCTTCAGAACGGATCACTGCACGGTGCTGCTGTTTTGACCTTTGGATCAGACCCTCCCCTTTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACAACACAAAATGGTTTTCATTCACCTAATGGGGATGAATATTATGATACTGTTATGGCTTCAACTTTGAGTGAAAGGAGAGACAATGCTACTACTAGTACTAACTCACGTCAAGAATCATTGGATAATCATAAGAGTTATCATCATCATCATCATCATCATCATCATCAAGGTTTCACTCCTCAATTGTGCTTCCCAGGTTCTTCTTCTTCTCCTTGGCCTTATCCATCCAATAACCCTATAATGACTCCTTCAGCTTTTTGCCACCCTGTGCCATTCTACCCTACACAAGCTTTCTGGGGTTCCATGCCACCACCCTCTTGGAGTGTAAACTACCAATCTGCCCCTGGTTCTGGTCCAAATTCACCCACCTTAGGGAAACACTCAAGAGATGGCGATATCTTGTTTAGCACAGACATGGCAGCAAACAACAACAACAACAACACAGTGTTGATCCCAAAGACACTGAGAATTGATGACCCAACTGAAGCTGCTAAGAGCTCAATATGGTCAACACTAGGGATCAAGAATGAGAAGGGAAACTCCCTCAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGTAACAGTGATGACAAGAAGAACCACGCGGTGATGGTTGAAGCATCCCCATCACCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCCCTTGTCTTCCATGAGAGGACATAA 1470 0.4578 MSEVVTKDSAIKLFGRTISLSRNNNNNNNNNNNNEVSSSANGFSSDEPAPPEDSSSSFPREVSSTTEHEAGRDKEPSRKELTSAQEEDEEASHQTIEEPKSPTSSSCNLENPKTPSTERETSILKSSKTGDQSDATTTSPSQDKTLKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTPSSLSHFRQIMVPEGLQNGSLHGAAVLTFGSDPPLCDSMASVLSLAEKTTQNGFHSPNGDEYYDTVMASTLSERRDNATTSTNSRQESLDNHKSYHHHHHHHHHQGFTPQLCFPGSSSSPWPYPSNNPIMTPSAFCHPVPFYPTQAFWGSMPPPSWSVNYQSAPGSGPNSPTLGKHSRDGDILFSTDMAANNNNNNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGNSDDKKNHAVMVEASPSPVLQANPAALSRSLVFHERT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0912 489 ProSitePatterns Zinc finger Dof-type signature. 155 191 IPR003851 GO:0003677|GO:0006355
Gso2g0912 489 MobiDBLite consensus disorder prediction 282 296 - -
Gso2g0912 489 MobiDBLite consensus disorder prediction 97 143 - -
Gso2g0912 489 ProSiteProfiles Zinc finger Dof-type profile. 153 207 IPR003851 GO:0003677|GO:0006355
Gso2g0912 489 MobiDBLite consensus disorder prediction 16 64 - -
Gso2g0912 489 MobiDBLite consensus disorder prediction 1 153 - -
Gso2g0912 489 MobiDBLite consensus disorder prediction 282 315 - -
Gso2g0912 489 MobiDBLite consensus disorder prediction 65 96 - -
Gso2g0912 489 Pfam Dof domain, zinc finger 150 207 IPR003851 GO:0003677|GO:0006355
Gso2g0912 489 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 6 489 - -
Gso2g0912 489 PANTHER CYCLIC DOF FACTOR 2 6 489 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0912 Gso-Chr2 10409080 10412831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0912 8 487 C2C2-Dof Transcription Factor Family AT5G39660 39.130 6.50e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso2g0912 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0912 - - gsj:114386623 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0425 1 5819618 5823193 Gso2g0912 2 10409080 10412831 GST
Gso2g0912 2 10409080 10412831 Gso5g0215 5 2258870 2261657 PCT
Gso2g0912 2 10409080 10412831 Gso17g0848 17 7954732 7958016 PCT