Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0839 ATGAAAAAGGAATTAGAAGATCATGGCCAGTGTTCCTCTCCACCAATCATCAACAACAACATTCAAAGCTACAAAGAACACCTTCTTCTTCAACAACAGATGCAACAAAACAGTGACATCTTTGGTGGTGGTGGTGGTTCAAAAGGGCTAATGTTCCCACCTGAAGTAGTCTCTTCAATCTTACAACAACAACCATGGTCCATTCCTCCAGTTCCCTCCTTCAATCCCAACCCGGTTCACTACAACAACACAAACCCGGTTCATCTTCATGAGCAAGCATCATCATTTCTTGTCCCTCCTCCCACAACAACACCTTCACCCTATGCAAGCTTCTTCAGCAGCAGAAGGGTTGTCCCTTCTCTCCATTTTGCATACGAGGGTCCCTCTTCTCATCATGATCACCACCATTTGAGGATCATATCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCAGCACCCTTTGGACTCCAAGCCGAGCTGGGAAGGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCTTCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGTTTGCTTCCTAACACTACCAAAACAGATAAAGCTTCATTATTAGCAGAAGTGATTCAGCAAGTGAAGGAGCTGAAGCGCCAAACCTCACTCATAGTAGAAATGAGTACAGTGCCCACCGAATCAGACGAGTTAACGGTGGACGCAATCGACGAAGACGGAAAGTTCGTGATCAAAGCCTCACTGTGCTGCGAAGATAGGTCAGATCTCTTACCTGACCTAATCAAGACGCTAAAAGCATTGAGACTAAGAACCCTTAGGGCCGAAATCACTTCACTCGGTGGACGTGTGAAGAACGTGTTAGTCATAACCGGTGATGAAGAAGAAAATTCGAACACCAACAATGGAGAACAAAGCATGCAACAACAATATTGTATTAGCTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGTGGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTACTACTACTAATAATAAAATCAATATCCTTGAACAAAGCTCTTTATGA 1119 0.4504 MKKELEDHGQCSSPPIINNNIQSYKEHLLLQQQMQQNSDIFGGGGGSKGLMFPPEVVSSILQQQPWSIPPVPSFNPNPVHYNNTNPVHLHEQASSFLVPPPTTTPSPYASFFSSRRVVPSLHFAYEGPSSHHDHHHLRIISDTLGPMVQPGSAAPFGLQAELGRMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQQVKELKRQTSLIVEMSTVPTESDELTVDAIDEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLRAEITSLGGRVKNVLVITGDEEENSNTNNGEQSMQQQYCISSIQEALKAVMEKSGGGDESASGNVKRQRTTTTNNKINILEQSSL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0839 372 SMART finulus 183 232 IPR011598 GO:0046983
Gso2g0839 372 Gene3D - 172 232 IPR036638 GO:0046983
Gso2g0839 372 PANTHER TRANSCRIPTION FACTOR BHLH30 85 361 - -
Gso2g0839 372 MobiDBLite consensus disorder prediction 348 372 - -
Gso2g0839 372 MobiDBLite consensus disorder prediction 338 372 - -
Gso2g0839 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 234 IPR036638 GO:0046983
Gso2g0839 372 CDD bHLH_AtAIG1_like 172 251 - -
Gso2g0839 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Gso2g0839 372 PANTHER TRANSCRIPTION FACTOR BHLH30 85 361 IPR045847 GO:0003700|GO:0006355
Gso2g0839 372 Pfam Helix-loop-helix DNA-binding domain 180 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0839 Gso-Chr2 9465889 9470213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0839 19 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.570 4.67e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g0839 HLH 5.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0839 2 9465889 9470213 Gso2g0839 2 9465889 9470213 ECH
Gso1g0745 1 26113229 26117737 Gso2g0839 2 9465889 9470213 GST