Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0826 ATGCAAGCTCACCACCCTTTCTCCTACATATCATCTTGTCCTGGTAATAGTACTAGTAGTGCCTTCTTGGAACCTCATCATCATCATCATGAAGCTGTAGTGGATGAAGCTTCCATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACACCAACAACACAACAACCCCAACAAAGCCGTGACTTCTTCCATTCCTCACCACCATTACCAGCAAAACCCTACTACTACTACTAGCTCTGATGATCATCATCGTCAGAGAGGTGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTACTACCCCAACAACTTCACCAAACAGTGTCACCACGACTACTACTACTACTAGCAAGTCGCCTGATCTTCATTTGGCCTCTGCTGCACCCAACATTCAGGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTATGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCGCAATACAGAAAAGGCCCTGAATCACTTCGGGGCGCAAAGCCAGCATCGTCGATGCTGCGGCTTCCCTGCTACTGCTGTGCGGAGGGCTGCAAAAACAATATAGAACACCCGAGATCACGGCCGTTGAAGGACTTCAGGACCCTCCAGACGCACTACAAGAGGAAGCACGGGGCGAAGCCGTTCGGGTGCCGGAAGTGCGGGAAGCCTTTTGCGGTGAGAGGTGACTGGAGGACGCACGAGAAGAACTGCGGGAAGCTATGGTTCTGTATCTGTGGGTCTGATTTCAAGCACAAGAGGTCGCTTAAGGACCATGTTCGTGCCTTTGGGGATGGACATGCTCCTCACACTGTGGAGAGCTGTGGTCGGGTGGGGGAGGATGGCTTGTTGTTGTTGGGGGATGATGATGATGATGAGTTGGAAGTGGAGGAGGATGATGAGGAGGAGGATTATAATAGTAATGATTTGGTTTTTGGTTTTAATTAA 1005 0.5055 MQAHHPFSYISSCPGNSTSSAFLEPHHHHHEAVVDEASISLSLGPPGQQHQQHNNPNKAVTSSIPHHHYQQNPTTTTSSDDHHRQRGGVTVALHIGLPSTTPTTSPNSVTTTTTTTSKSPDLHLASAAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCGRVGEDGLLLLGDDDDDELEVEEDDEEEDYNSNDLVFGFN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0826 334 MobiDBLite consensus disorder prediction 312 326 - -
Gso2g0826 334 SUPERFAMILY beta-beta-alpha zinc fingers 218 255 IPR036236 -
Gso2g0826 334 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Gso2g0826 334 Gene3D Classic Zinc Finger 177 260 - -
Gso2g0826 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Gso2g0826 334 MobiDBLite consensus disorder prediction 312 334 - -
Gso2g0826 334 MobiDBLite consensus disorder prediction 41 121 - -
Gso2g0826 334 MobiDBLite consensus disorder prediction 96 121 - -
Gso2g0826 334 PANTHER ZINC FINGER PROTEIN WIP2 1 323 IPR043584 GO:0003700|GO:0010468
Gso2g0826 334 SUPERFAMILY beta-beta-alpha zinc fingers 146 171 IPR036236 -
Gso2g0826 334 PANTHER ZINC FINGER PROTEIN WIP6 1 323 - -
Gso2g0826 334 MobiDBLite consensus disorder prediction 42 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0826 Gso-Chr2 9170420 9172363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0826 35 291 C2H2 Transcription Factor Family AT1G13290 68.605 2.50e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g0826 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0826 2 9170420 9172363 Gso2g0826 2 9170420 9172363 ECH
Gso1g0731 1 25449173 25451295 Gso2g0826 2 9170420 9172363 GST