Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0520 ATGCCGTCGTCGAATTCCGGCGAGAGTCGCCGAGCGAGCAAGCCGCAGAGCTCGGGCGGAGCGGCGCCGCCGCCGCCGGAGCAGGAAAACCTGCCGTGCCCGCGATGCGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCCCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGCGACATTCCCGTCGGCGGCGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACGTCGCCGCCACATCATCCTCCTCCACCTCGTCCACCATGACGTCAGCACAGGAACACCACGCACACACTTTATTGGCCCCCGTCGCCTCCACGCACTACGGAGTACTTGACGGCGATGTTAAACAGACTAGCAACGGCAACGGTAACGTGTGCGGGAGCTTCACTTCGTTGCTGAACAACACCCATGGCTCCGGGTTTCTCGCCCTGGGTGGCTTTGGGCTTGGACACGGGTATGACGACATGGGTTTTGGCATTGGGAGATCGGGCTGGGCCTTCCCAGGAATGGTCGACGGTGGCAACATTGGCGGCGCCGTCGCGTCTTCTGGCCTAAACACGTGGTAG 615 0.6309 MPSSNSGESRRASKPQSSGGAAPPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHVAATSSSSTSSTMTSAQEHHAHTLLAPVASTHYGVLDGDVKQTSNGNGNVCGSFTSLLNNTHGSGFLALGGFGLGHGYDDMGFGIGRSGWAFPGMVDGGNIGGAVASSGLNTW* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0520 204 MobiDBLite consensus disorder prediction 72 103 - -
Gso2g0520 204 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 200 - -
Gso2g0520 204 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Gso2g0520 204 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Gso2g0520 204 MobiDBLite consensus disorder prediction 1 16 - -
Gso2g0520 204 MobiDBLite consensus disorder prediction 1 33 - -
Gso2g0520 204 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Gso2g0520 204 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 200 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0520 Gso-Chr2 5561057 5562384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0520 1 183 C2C2-Dof Transcription Factor Family AT3G50410 51.020 6.37e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso2g0520 zf-Dof 6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0520 - - gmx:778095 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0520 2 5561057 5562384 Gso2g0520 2 5561057 5562384 ECH
Gso2g0520 2 5561057 5562384 Gso16g1162 16 30819257 30820438 GST