Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0269 ATGTCAGAGGTTAAGGACCCTGCGATAAAGCTTTTTGGAAGGACAATTTCGCTGCCACACACACACATCAATGATTCTTTTTCTTCTGCTTCTGCTTCAGGACCTGCTTGTGCCCCTTCATCTTCCTCTTCTCCTCGTGAAGTTACCTCTTCTGCAACACAACAACAGCATGAACCTGAGGAACCATCAAGGAAAGTACTTACCTCATCACAAGATGATGATGATGCCTCACATCAAACCACAGAGGATTTGAAATCTTCCACAACATCTTCAGGCATATTTGAGAATCCTAAGACTCCCTCAGCAGAAACCGAGACATCAATACCGAAATCCTCCACAAATGGAGAAAAAAGCGAGAAAAGTGCTTCTGAAGAAAAAACACTAAAGAAACCTGACAAGGTACTTCCATGCCCGCGATGCAATAGCATGGAAACCAAATTCTGTTACTACAACAACTACAATGTCAACCAACCTCGCCATTTCTGCAAGAACTGCCAGAGATACTGGACAGCTGGAGGTACAATGAGAAATGTGCCGGCAGGAGCCGGTCGTCGAAAGAACAAGAATTCCTCGGCGACTGTGTCACATTACCGGCACATAATGTTCTCTGAAGGGCTTCAGGGAGCCACACTCAATGCCCCCAATGGATTGCATAATGCTGTTATGACCTTTGGTCCTGATTCTCCCCTTTGTGATACGATGGCATCTATGTTGAACATTGCTGAGAGAGCACAAAGTTGTGTTCCAAATGGGTTTCATGTAACTGAGCCAAATAGTTTTGTTTCCTATAGAAAGGAGGAGGAGGAGGAGGATGGTACTAGTGGTCACTCTACTGGAGTTAATTCTGTTGCAACAACATCAACTTTAAGCCATAGTGGCTCACATGAATCATTGGATAAAAAAGTTGTTGAAGGTTTCACTCCTCAATTTCCATACTTTCCAAGTGCACCTTGGCCTTATCCTATCCCTCCTCCTACATTTTTCCCACAAGGGTACCCTTTATCATTGTATACTACACCTGCATATTGGAGTTATATGCCACCCTCTTGGAATAACAATATATCAGCTATCTCACCCCAATCTTCTGTTAACAACTCTGTCTCTAACCCTACTTTGGGGAAACACTCAAGGGATGGAAACATCATTGCTTCATCCAATTCACAAAGAGAAATGCATGACATGGAGCACAACAGCTCAGAACACAATGCCTTGATCCCCAAGACACTTAGAATTGATGACCCTAGAGAAGCTGCAAAGAGTTCCATTTCCATGTGGTCAAAACTAGGGATCAAGAATGATGACAAGGCCAGTTCCGGAGGCCTTTTCAAGGCTTTTCCATCATCCAAGGGAAATGATATCAATCATCAAATGGTTGAAGCATCATCGCCGGTGTTGCAGGCCAACCCTGCGGCTCTATCGCGGTCTCTTACCTTCCGCGAGCAGACCTAA 1449 0.4431 MSEVKDPAIKLFGRTISLPHTHINDSFSSASASGPACAPSSSSSPREVTSSATQQQHEPEEPSRKVLTSSQDDDDASHQTTEDLKSSTTSSGIFENPKTPSAETETSIPKSSTNGEKSEKSASEEKTLKKPDKVLPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPAGAGRRKNKNSSATVSHYRHIMFSEGLQGATLNAPNGLHNAVMTFGPDSPLCDTMASMLNIAERAQSCVPNGFHVTEPNSFVSYRKEEEEEDGTSGHSTGVNSVATTSTLSHSGSHESLDKKVVEGFTPQFPYFPSAPWPYPIPPPTFFPQGYPLSLYTTPAYWSYMPPSWNNNISAISPQSSVNNSVSNPTLGKHSRDGNIIASSNSQREMHDMEHNSSEHNALIPKTLRIDDPREAAKSSISMWSKLGIKNDDKASSGGLFKAFPSSKGNDINHQMVEASSPVLQANPAALSRSLTFREQT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0269 482 MobiDBLite consensus disorder prediction 389 412 - -
Gso20g0269 482 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 482 - -
Gso20g0269 482 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Gso20g0269 482 MobiDBLite consensus disorder prediction 264 296 - -
Gso20g0269 482 MobiDBLite consensus disorder prediction 58 81 - -
Gso20g0269 482 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Gso20g0269 482 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Gso20g0269 482 MobiDBLite consensus disorder prediction 19 57 - -
Gso20g0269 482 Pfam Dof domain, zinc finger 132 189 IPR003851 GO:0003677|GO:0006355
Gso20g0269 482 MobiDBLite consensus disorder prediction 16 135 - -
Gso20g0269 482 MobiDBLite consensus disorder prediction 82 116 - -
Gso20g0269 482 MobiDBLite consensus disorder prediction 388 412 - -
Gso20g0269 482 MobiDBLite consensus disorder prediction 361 380 - -
Gso20g0269 482 MobiDBLite consensus disorder prediction 275 293 - -
Gso20g0269 482 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0269 Gso-Chr20 4797903 4801264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0269 4 480 C2C2-Dof Transcription Factor Family AT5G39660 38.645 8.60e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso20g0269 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0269 - - gmx:100807731 894.419