Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1570 ATGATCCAAGAACTGTTGGGTGGTGCTAGTGCTAGCCTCATAGCAGGAGAAAGAAAAATCTCCATTACTAACGGAGGAGGAGCACTTCTACTAACACCACCCACTTCATCTTCTCCTTCTCTATCACCTTCTTGCACAACAAGCATAACCACTTCCACCGCCACCGCCACCTCGTCGAATTCAGAGAACCAAAACTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGTCACTTCTGCAAAACATGTCGCCGGTACTGGACCAAAGGCGGCGCTCTCAGGAATGTTCCCATCGGTGGTGGCTGCCGGAAAAGCAAAAGCTCCGGCATGTCCAACTCGGTTGCCAAGCAAACCGCCACAAAGATGAAAGCAGTGGCATCAGAGCTTGGAAGGTCGTCGTCACAAGGACTCTTGGACCAAGAGCTTCCGCAAACCCCAGCAATCCTGTGGGGTTCTCCACAAAATTCTCAACTGATGGCTTTACTAAGAGCTAACCAAAACCATAACCCTAACCCTAACCCTAGTCCAATGTCAATTGTTGTCAAGGGAGAAGGGAACTTAATGGGATCTCACCACATGGTGGCTGAGCCATTGCTCGCAAATGGGTTGTTGAATCCTAGAACTAGTCTAGGCTTTGATGGTGTGGGAGAAGTACTTCCTTCACTGGGTCTATGCGGCTCTTTTTGGAGGAACAATCAAGATCAGACTCAGCAACAAAACAACGGTTTTGCACTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCATCAATTAATTATTGTGGCAGTGATAACTCACCAGTGTTTCTAAGCAACATGGCTTCTTCTTCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGATCTTCCCACTACCAATGGAGCATATCCTTAA 1011 0.4708 MIQELLGGASASLIAGERKISITNGGGALLLTPPTSSSPSLSPSCTTSITTSTATATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQTATKMKAVASELGRSSSQGLLDQELPQTPAILWGSPQNSQLMALLRANQNHNPNPNPSPMSIVVKGEGNLMGSHHMVAEPLLANGLLNPRTSLGFDGVGEVLPSLGLCGSFWRNNQDQTQQQNNGFALGEHQSSGVQELYHKLRSSSSSINYCGSDNSPVFLSNMASSSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTNGAYP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1570 336 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Gso1g1570 336 MobiDBLite consensus disorder prediction 33 65 - -
Gso1g1570 336 PANTHER F-BOX FAMILY PROTEIN 29 334 - -
Gso1g1570 336 Pfam Dof domain, zinc finger 64 120 IPR003851 GO:0003677|GO:0006355
Gso1g1570 336 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Gso1g1570 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 334 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1570 Gso-Chr1 52360386 52362050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1570 36 126 C2C2-Dof Transcription Factor Family AT5G65590 63.441 5.20e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso1g1570 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1570 - - gmx:778100 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1570 1 52360386 52362050 Gso11g0508 11 4530062 4531753 GST
Gso1g1570 1 52360386 52362050 Gso17g1528 17 20819025 20820654 PCT
Gso17g1528 17 20819025 20820654 Gso1g1570 1 52360386 52362050 PCT