Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1418 ATGGCTCTGTTTTCAAATCACCGACACTCTTCCGAAGCGCTCTTGGGCTTTCTACTCTTCCTCGTATTCAGAGGGGTTTCAGTTTCAGGGGCAACATTTACCTTCGTGAACAAGTGCGATTACACAGTATGGCCAGGGATTTTAGGTACGCCGGAACTCGGAAGCACAGGCTTTGAACTTGCGAAGGAAGGTTCAAGAAGCTTCCAGGCTCCGACCGGCTGGTCCGGTAGATTCTGGGGCAGAACCGGTTGCCAATTCGACGGTTTGGGGAAAGGAACGTGCGCCACCGCGGACTGCGGCTCCGGCGAGGTCAACTGCAACGGCGCCGGAGCCTCCCCGCCGGCCACGCTAGCCGAGTTTACACTCGGCACCGGCTCCATGGACTACTACGACGTCAGCCTCGTCGACGGCTACAATCTGCCCATGATGGTGGTGGCCAGAGGCGGCTCGGGGTCCTGCGGCGCCACCGGGTGCGGTGAGGATCTCAACCGGCGGTGCCCGTCGGAGCTGAGGGTGGAGGGCGGCGACGCGTGCCAGAGCGCGTGCGGCGCGTTCGGGAAACCGGAGTATTGCTGCAACGGTGCGTTTAGTAACCCTTCCACGTGCAAGCCTTCCATGTACTCGCAAATGTTCAAGTCCGCATGCCCCAAAGCCTATAGCTACGCTTACGATGATGCCACTAGCACCTTCACGTGTTCCGGCGCTGACTACACAATCACATTTTGTCCTTCTTCTCCAAGTTTAAAGTCTTCAACGGATTCAAGTCCAAAGGGAATAGATGGAGGGTCAGGGTCTGTGGGAGGTTCATCGGTTGAGCAATCTGAATTAGCTTCTACTTCGTGGTTAGCCGACATGGCAACAGCTACAGGGGCCTCAACACGAACACGGCCTCTTGTTGCATCAAAGGTCTCTTTTTCTGTGGTGGTGGTTTTCATTCTCTCTCTTTTGGTCGCTTAG 957 0.5632 MALFSNHRHSSEALLGFLLFLVFRGVSVSGATFTFVNKCDYTVWPGILGTPELGSTGFELAKEGSRSFQAPTGWSGRFWGRTGCQFDGLGKGTCATADCGSGEVNCNGAGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMMVVARGGSGSCGATGCGEDLNRRCPSELRVEGGDACQSACGAFGKPEYCCNGAFSNPSTCKPSMYSQMFKSACPKAYSYAYDDATSTFTCSGADYTITFCPSSPSLKSSTDSSPKGIDGGSGSVGGSSVEQSELASTSWLADMATATGASTRTRPLVASKVSFSVVVVFILSLLVA* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1418 318 MobiDBLite consensus disorder prediction 246 270 - -
Gso1g1418 318 ProSiteProfiles Thaumatin family profile. 30 243 IPR001938 -
Gso1g1418 318 SMART tha2 33 243 IPR001938 -
Gso1g1418 318 Pfam Thaumatin family 37 243 IPR001938 -
Gso1g1418 318 CDD TLP-PA 32 242 - -
Gso1g1418 318 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Gso1g1418 318 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Gso1g1418 318 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Gso1g1418 318 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Gso1g1418 318 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Gso1g1418 318 PANTHER OS03G0233200 PROTEIN 11 261 IPR001938 -
Gso1g1418 318 PANTHER THAUMATIN-LIKE PROTEIN 1 11 261 - -
Gso1g1418 318 SUPERFAMILY Osmotin, thaumatin-like protein 31 244 IPR037176 -
Gso1g1418 318 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Gso1g1418 318 Gene3D Thaumatin 31 243 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1418 Gso-Chr1 50807601 50809869 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1418 1 50807601 50809869 Gso1g0490 1 7566990 7569707 PCT
Gso1g1418 1 50807601 50809869 Gso2g0969 2 11262859 11265614 PCT
Gso1g0490 1 7566990 7569707 Gso1g1418 1 50807601 50809869 PCT
Gso2g0969 2 11262859 11265614 Gso1g1418 1 50807601 50809869 PCT