Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0747 ATGTCTTCACACCCATCATTCTTTTTCCTCTTCTTCTTCCTGCTTCTCACCCTCCCACATTATTCCTCCGAGTACCTCAAATTACCCTTACTTCCTCCCACCCCCCTCCCCTCTCCCTCCCAGCTCCTTGCCGCCGACCTCCGCCGCCTCTCCGTCAAGTCCCCCCTCACCTCCGGCGCCGCCACTGGCTCAGGCCAGTACTTCGCCGACCTCCGCCTCGGCTCCCCTCCCCAGCGCCTCCTCCTCGTCGCCGACACCGGCAGCGACCTCCTCTGGGTCAAATGCTCCGCCTGCCGCCGCAACTGCTCCTCCTCCATCTCCGCCTTCCTCCCCCGCCACTCCACCTCCTTCTCCCCCCACCACTGCTACGACTCGCCGTGTCAACTCGTCCCCCACCCCCCGAGTCACAAAAATCGTCTCTGCCACAACCGCACCAAACTCCACACCCCATGCCGCTACCAATACTCCTACGCCGACGGGTCCACCTCCACCGGCTTCTTCTCCAAAGAAACAATAACACTCAACACTACTAGCTCTACCCTACTAACAACACTCAAAAAGCTTTCCTTCGGATGTGGGTTTAGAACCTCCGGCCCGAGCGTCACGGGCCACAGCTTTAACGGCGCGCAGGGCGTAATGGGCCTGGGCCGCGGCCCGATCTCCTTCACCTCCCAGCTCAGTAACACAAACACAAAACACACCTTCTCTTACTGTCTCCTCGACTACACCCTCTCCCCTCCCCCCACTAGCTACCTCACCATCGGCCCCACCCCAAATGACGCCGTTTCGCAGAACTCATTCACTTACACACCGTTACTCACTAACCCTTTTTCTCCTTCCTTTTACTACATTTCTATTCAGAGTGTTTCCGTTGACGGCGTTAGGTTACCGATAAGTGAATCTGTTTTTCGGATTGACGCCCACGGTAACGGCGGCACCGTCGTGGATTCTGGCACCACGCTCAGTTTTCTCGCGGAGCCGGCTTACGGAAAGATCCTCGCGGCGTTCCGGCTGCGCGTCAGGCTTCCGGCGGTGGAGAGCGCAGCCACGCTCGGGTTCGACCTTTGTGTGAATGTCTCCGGCGTGGCGAGGCCGAGGCTGCCGCGTCTGAGATTCCGGCTCGCCGGAAAAGCGGTTCTGTCTCCGCCGGCGGGAAATTATTTTATTGAACCGGCGGAGGGAGTGAAGTGTCTCGCGGTTCAACCGGTTCGACCGGGTTCTGGGTTTTCGGTGATTGGGAATCTGATGCAGCAGGGGTACTTGTTTGAGTTTGATTTGGACCGGTCTCGGATCGGGTTCACGCGTCACGGATGCGCGGTTCGCTAA 1326 0.5897 MSSHPSFFFLFFFLLLTLPHYSSEYLKLPLLPPTPLPSPSQLLAADLRRLSVKSPLTSGAATGSGQYFADLRLGSPPQRLLLVADTGSDLLWVKCSACRRNCSSSISAFLPRHSTSFSPHHCYDSPCQLVPHPPSHKNRLCHNRTKLHTPCRYQYSYADGSTSTGFFSKETITLNTTSSTLLTTLKKLSFGCGFRTSGPSVTGHSFNGAQGVMGLGRGPISFTSQLSNTNTKHTFSYCLLDYTLSPPPTSYLTIGPTPNDAVSQNSFTYTPLLTNPFSPSFYYISIQSVSVDGVRLPISESVFRIDAHGNGGTVVDSGTTLSFLAEPAYGKILAAFRLRVRLPAVESAATLGFDLCVNVSGVARPRLPRLRFRLAGKAVLSPPAGNYFIEPAEGVKCLAVQPVRPGSGFSVIGNLMQQGYLFEFDLDRSRIGFTRHGCAVR* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0747 441 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
Gso1g0747 441 Gene3D Acid Proteases 45 255 IPR021109 -
Gso1g0747 441 ProSiteProfiles Peptidase family A1 domain profile. 67 434 IPR033121 -
Gso1g0747 441 PRINTS Pepsin (A1) aspartic protease family signature 73 93 IPR001461 GO:0004190|GO:0006508
Gso1g0747 441 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Gso1g0747 441 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Gso1g0747 441 Pfam Xylanase inhibitor C-terminal 282 434 IPR032799 -
Gso1g0747 441 PANTHER BNAA02G27600D PROTEIN 23 440 - -
Gso1g0747 441 Gene3D Acid Proteases 256 440 IPR021109 -
Gso1g0747 441 CDD pepsin_A_like_plant 66 438 IPR034161 -
Gso1g0747 441 PANTHER OS07G0603500 PROTEIN-RELATED 23 440 - -
Gso1g0747 441 Pfam Xylanase inhibitor N-terminal 67 255 IPR032861 -
Gso1g0747 441 SUPERFAMILY Acid proteases 61 438 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0747 Gso-Chr1 26273093 26274809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0747 48 438 Miscellaneous Gene Families AT1G77480 27.119 2.61e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0747 1 26273093 26274809 Gso2g0840 2 9490150 9491811 GST