Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0742 ATGGCAACTATAGGAATTGGAGTAGGAGTGACGAAGCTCCAACCCCACAAACCAAAGTCTAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTAGACCATTTTGGGGGGAGCCTCAATGCAGTGAAAGAAGATTATTCAGTGTCTCAAACCCCCCAAGAGTGGTTCAAGTTTTTGCACTAGCGGGTGGTGAATGGCTTGACACTGTTCACAGCCTCTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGTGATGTGATATATAGGAGCACTCTTCCCAAGTCAAATGGCTTGACACTCACTGTCCCTGGGGTGATTTTGGCTTTGGGGACCCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAGAGGCTGTTCAGACCCACTTACAAGAAGGATGATTTTGTTCTGGGGAAGAAGTTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGTCTCTGACCAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCAACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGCTCTTCAAAGAAAGCTGCGGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGATGCAGAGTAGAGACTTTCCATATAATGTTGAAACATTAATTTTGGGTGAGGTCCAAGACTTGCCCAAAGGATTGGAGAGAGAAAATAGAATCATACAAACAATTGTGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTACATAGGGATATTAAGCCACAGAACATTATTTTCTCAGAAGAGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTCGGAATCAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAACAATACATCATGAGCACACAAACTCCATCGGCACCCTCAGTTCCAGTTGCAACTGCACTTTCGCCAGTCTTATGGCAGTTGAACTTGCCAGACAGATTTGATATCTATAGTGCTGGTTTAATCTTCCTTCAAATGGCATTCCCCAGTTTACGTTCTGATAATAGCCTCATACAATTCAACCGTCAACTAAAGAGGTGTGACTATGACTTGGTCGCATGGAGAAAATCTGCTGAGCCTCGATCTGAACTTAGAAAGGGCTTTGAGTTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTGAAATCCATGGTAAGGTACAAAGCAAGACAAAGGTTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGTCAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGACTGCAGCTCTTTCGCGCAACTCAGCAGGACTATTCAGAAGCTGCCAGGTGGATTATTCAGCTAATGGCAAAATCCGGGACACAGAAGGATGGTGGATTCACCGAAGCTCAGCTTCAGGAACTGAGAGAAATTGAACCTAAAAAGAAGGCTAGTGCACCGAGAAATGCTCTAGCTTCAGCCCTTAGACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCACAAGACGCCGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1734 0.4452 MATIGIGVGVTKLQPHKPKSKSLFLGQRLRIRPFWGEPQCSERRLFSVSNPPRVVQVFALAGGEWLDTVHSLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLTNKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKAAEYWLIWRFEGDATLADLMQSRDFPYNVETLILGEVQDLPKGLERENRIIQTIVRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPSLRSDNSLIQFNRQLKRCDYDLVAWRKSAEPRSELRKGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFVREGLLALSFMQTLRLQLFRATQQDYSEAARWIIQLMAKSGTQKDGGFTEAQLQELREIEPKKKASAPRNALASALRLQRKIIRTLNESMDELTRRRKSFWWSRWIPREE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0742 577 Gene3D Transferase(Phosphotransferase) domain 1 260 471 - -
Gso1g0742 577 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Gso1g0742 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 17 577 - -
Gso1g0742 577 Pfam Protein kinase domain 153 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0742 577 Coils Coil 543 563 - -
Gso1g0742 577 SMART serkin_6 151 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0742 577 CDD STKc_SNT7_plant 155 467 - -
Gso1g0742 577 ProSiteProfiles Protein kinase domain profile. 151 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0742 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Gso1g0742 577 SUPERFAMILY Protein kinase-like (PK-like) 136 469 IPR011009 -
Gso1g0742 577 ProSitePatterns Protein kinases ATP-binding region signature. 157 184 IPR017441 GO:0005524
Gso1g0742 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 17 577 IPR044803 GO:0004674|GO:0009579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0742 Gso-Chr1 25968991 25974803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0742 269 467 Core Cell Cycle Gene Families AT2G38620 28.436 9.44e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gso1g0742 Pkinase 8.5e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0742 1 25968991 25974803 Gso2g0833 2 9410031 9415762 GST