Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0731 ATGCAAGCTCACCACCCTTTCTCCTACATATCCTCTTGTCCTGGTAGTAGTACTAGTGCCTTCTTGGAACCTCATCATCACCATCATCATGAAGTTGTGGATGAAGCCTCTATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACAACACAAAAACCACTACCAAGCCACCACTTCCTCCTCCTCTCACCACCCTTCTTCCATTCTGCACCACCATTACCAGCAAAATCCTAGTACTACTACTGCTACCACCTCTGATGATCATCATCACCAGAGAGGTGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTCCCACCACCACAACTTCTTCAACAAACAGTGCCACCACCCCAACTACTACTAGCAAGTTGCCTGATCTTCATTTGGCCTCTGCTGCCCCCAACATTCAGGGCCAGTATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGCCCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGCTCGCAATACAGAAAAGGCCCCGAATCGCTTCGGGGCGCAAAGCCAGCATCCTCGATGCTGCGGCTTCCCTGCTACTGCTGCGCGGAGGGCTGCAAGAACAACATCGAGCACCCAAGGTCGAGGCCGCTGAAGGACTTCAGGACGCTCCAGACGCACTACAAGAGGAAGCACGGTGCGAAGCCGTTCGGGTGCCGGAAGTGCGGGAAGCCTTTTGCAGTGAGAGGTGACTGGAGGACGCACGAGAAGAACTGCGGGAGGCTCTGGTTCTGCATCTGCGGGTCTGATTTCAAGCACAAGAGGTCTCTCAAGGACCATGTTCGCGCCTTTGGGGATGGACATGCTCCGCACACTGTGGAGAGCTGTGATCGGGTGGGGGAGGATGAGGATGATGAGGAGTTGGAAGTGGAGGATGAGGAGGAGGAGGATTATCATAGTAATGATTTGGTTTTTGGTTTTAATTAA 999 0.5285 MQAHHPFSYISSCPGSSTSAFLEPHHHHHHEVVDEASISLSLGPPGQQQHKNHYQATTSSSSHHPSSILHHHYQQNPSTTTATTSDDHHHQRGGVTVALHIGLPSPTTTTSSTNSATTPTTTSKLPDLHLASAAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDRVGEDEDDEELEVEDEEEEDYHSNDLVFGFN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0731 332 MobiDBLite consensus disorder prediction 102 124 - -
Gso1g0731 332 Gene3D Classic Zinc Finger 180 265 - -
Gso1g0731 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Gso1g0731 332 MobiDBLite consensus disorder prediction 301 332 - -
Gso1g0731 332 SUPERFAMILY beta-beta-alpha zinc fingers 224 261 IPR036236 -
Gso1g0731 332 PANTHER ZINC FINGER PROTEIN WIP6 1 323 - -
Gso1g0731 332 SUPERFAMILY beta-beta-alpha zinc fingers 152 177 IPR036236 -
Gso1g0731 332 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Gso1g0731 332 MobiDBLite consensus disorder prediction 303 323 - -
Gso1g0731 332 MobiDBLite consensus disorder prediction 20 124 - -
Gso1g0731 332 PANTHER ZINC FINGER PROTEIN WIP2 1 323 IPR043584 GO:0003700|GO:0010468
Gso1g0731 332 MobiDBLite consensus disorder prediction 41 84 - -
Gso1g0731 332 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0731 Gso-Chr1 25449173 25451295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0731 34 303 C2H2 Transcription Factor Family AT1G13290 66.052 1.93e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g0731 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0731 1 25449173 25451295 Gso2g0826 2 9170420 9172363 GST