Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0710 ATGGCACCTCTCACTTATCTCTTCTTCCCACTCTTTCTTCTCTTTGCCTTAACCCACTCCAGAACCACACCACACTCTCCCCAAACGACACTCCTGGACGTCGTTTCCTCCCTCCAAAACGCACACAATGTCGTCGCCTTCACCCACCACCACCCTAACAAACACCAACGACAACAAGAATCCTCGCTTCTAACGTCGTCGTTTGGTATTCAGTTACACTCCCGAGCCTCAATTCAGAAATCCTCCCACAGCGACTACAAATCGTTAACCTTATCTCGACTCGCTCGCGACTCAGCTCGAGTCAAAGCTTTACAAACTCGCCTAGATCTCTTTCTGAAACGCGTCTCGAACTCGGACCTCCACCCGGCCGAGTCAAAGGCCGAGTTCGAGTCCAACGCGCTGCAAGGCCCTGTTGTCTCGGGAACGAGTCAGGGAAGCGGCGAGTACTTCCTCCGAGTCGGAATCGGAAAGCCACCGAGTCAAGCCTACGTGGTTCTCGACACGGGAAGCGACGTGAGCTGGATCCAATGCGCGCCGTGCTCCGAATGCTACCAACAATCGGATCCAATCTTCGACCCGATTTCGTCGAATTCGTACTCTCCGATCCGCTGCGACGAGCCGCAGTGTAAGTCCCTGGACCTCTCCGAGTGCCGCAACGGCACGTGCCTCTACGAAGTCTCCTACGGCGACGGATCCTACACCGTCGGAGAGTTCGCGACTGAGACTGTGACGCTGGGCTCCGCGGCGGTGGAGAACGTCGCCATCGGATGCGGCCACAACAACGAAGGACTGTTCGTCGGCGCCGCCGGTTTGCTCGGCCTTGGCGGCGGAAAGCTCTCTTTTCCAGCACAAGTCAATGCGACGTCGTTTTCTTATTGCCTCGTGAACCGCGACTCCGACGCCGTTTCAACTCTGGAGTTCAATTCACCGTTGCCGCGAAATGCTGCTACTGCACCGTTAATGCGGAATCCCGAGCTCGACACTTTCTACTATCTAGGATTGAAAGGAATCAGCGTTGGCGGTGAAGCTCTTCCGATTCCTGAATCGAGTTTTGAAGTTGATGCCATCGGCGGCGGAGGGATTATTATCGATTCCGGCACGGCGGTGACGCGGTTAAGGAGTGAGGTTTACGACGCGCTCCGCGACGCGTTTGTGAAGGGGGCGAAGGGGATTCCGAAGGCGAACGGCGTGTCGTTGTTTGACACTTGCTACGACTTGTCGTCGAGGGAAAGTGTGGAGATTCCGACGGTGTCGTTTCGCTTTCCTGAAGGGAGGGAGTTACCGTTACCGGCGAGGAATTACCTGATACCGGTTGACTCGGTGGGGACGTTCTGCTTCGCGTTTGCGCCCACCACGTCGTCGCTTTCAATCATTGGGAACGTGCAGCAGCAGGGGACACGTGTCGGTTTCGATATCGCGAATTCGCTCGTTGGATTCTCTGTTGATAGCTGCTAG 1455 0.5588 MAPLTYLFFPLFLLFALTHSRTTPHSPQTTLLDVVSSLQNAHNVVAFTHHHPNKHQRQQESSLLTSSFGIQLHSRASIQKSSHSDYKSLTLSRLARDSARVKALQTRLDLFLKRVSNSDLHPAESKAEFESNALQGPVVSGTSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWIQCAPCSECYQQSDPIFDPISSNSYSPIRCDEPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGSAAVENVAIGCGHNNEGLFVGAAGLLGLGGGKLSFPAQVNATSFSYCLVNRDSDAVSTLEFNSPLPRNAATAPLMRNPELDTFYYLGLKGISVGGEALPIPESSFEVDAIGGGGIIIDSGTAVTRLRSEVYDALRDAFVKGAKGIPKANGVSLFDTCYDLSSRESVEIPTVSFRFPEGRELPLPARNYLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSVDSC* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0710 484 ProSiteProfiles Peptidase family A1 domain profile. 149 480 IPR033121 -
Gso1g0710 484 SUPERFAMILY Acid proteases 142 484 IPR021109 -
Gso1g0710 484 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 484 - -
Gso1g0710 484 PANTHER ASPARTYL PROTEASES 8 484 IPR001461 GO:0004190|GO:0006508
Gso1g0710 484 Gene3D Acid Proteases 308 484 IPR021109 -
Gso1g0710 484 Pfam Xylanase inhibitor N-terminal 149 306 IPR032861 -
Gso1g0710 484 Pfam Xylanase inhibitor C-terminal 330 480 IPR032799 -
Gso1g0710 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 164 175 IPR001969 GO:0004190|GO:0006508
Gso1g0710 484 Gene3D Acid Proteases 122 307 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0710 Gso-Chr1 24301721 24303637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0710 139 484 Miscellaneous Gene Families AT1G77480 25.526 1.00e-23 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0710 1 24301721 24303637 Gso2g0814 2 8844615 8846810 GST