Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0707 ATGCCATTCTCTTCTCAAAGACACAGCAGGATCTTCCTACCTTCTCACACTTCCTTGTTCTTGTTCTCTTTGATGAAAAATATGCAAGGCTTCAAGACAGCACAGCCAAGTTCACAACAACTCTATTGTCACTCTTCCTTCTTGCTTAGGGGAAATGACCCCAACCAAAACCCAGCGCGGTTCTCTGATCTTGGGGAGCATCACCATTTCTCTGCTGTTTTTCATCAAGAAGATGCTGCTGATTTAAGTTCAAGTTCTATGTTTAGTGTGAAGTCAAGCAATGTTGTTGGGGGCAGTAACATGCAGTATGGGACGCTGAACACGAATGTTGGGCATGCAGAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAAGACAGCAACTGATGTACCACAAAGGAGTGACTATGGCAGCCTTGCCTTTGGGGAATGGTCAAGTTGAGAATTGGGCTGATTCAGGCAAAGCAGATAATAGCCAACAGACTGATGATACATCCACAGATATTGATACTGATGATATAATCCCAACCCTTCGTAGACTGGCTCAGAATCGGGAGGCTGCAAGGAAAAGTCGATTAAGGAAAAAGGCGTATGTACAACAGTTGGAGAGCAGCCGAGTAAAGCTTGTGCAATTAGAGCAAGAGCTTCAACGAGCACGTCAGCAGGGTATATTTATTGCGACTCCAGGGGATCAAGGTCATTTGGCTGTTGGAAATGGTGCCTTAGCATTTGACATAGACTATGCTCACTGGGTTGATGAGCATCAACGTCTTCTCAATGATCTAAGAACAGCAGTAAATTCTCAAATGAGTGATAGTGACTTGCATATTCTGGTAGATAGTGTCATGGCACATTATAACGAGTTATTTAGGTTAAAGAGCTTAGGTACAAAGGCTGATGTATTACACATACATAATGGGATGTGGAAGACACCTGTGGAAAGATGTTTTATGTGGCTTGGTGGATTCCGTTCATCCGAACTTCTCAAGATCATCAAGAACCACCTTGAGCCATTAACAGATCAGCAGTTGATGGGAATTTATAATCTGCAACAGTCTTCCCAGCAGGCTGAGGATGCTTTATCTCAAGGCTTGGAAGCATTGCAACAATCTCTTGTAGAAACACTTTCCTCCATCTCCCTAGGACCCACTGATAGTGGAAATGTAGTTGATTACATGGGCCAAATGGCACTTGCAATGGGCAAGCTTGCTGATCTGGAGAGTTTTGTTCGTCAGGCTGACCTCTTGAAGCAACAAACTCTTCAACAGTTGCAACGAATTTTGACAACGCGTCAAACTGCCCGAGCCCTCCTTGTCCAAACTGATTACATTTCTAGACTAAGAGCGCTTAGTTCGTTATGGTTGGCGCGCCCTAGAGAGTAG 1383 0.444 MPFSSQRHSRIFLPSHTSLFLFSLMKNMQGFKTAQPSSQQLYCHSSFLLRGNDPNQNPARFSDLGEHHHFSAVFHQEDAADLSSSSMFSVKSSNVVGGSNMQYGTLNTNVGHAEIGSSGGGCMDTRQQLMYHKGVTMAALPLGNGQVENWADSGKADNSQQTDDTSTDIDTDDIIPTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLVQLEQELQRARQQGIFIATPGDQGHLAVGNGALAFDIDYAHWVDEHQRLLNDLRTAVNSQMSDSDLHILVDSVMAHYNELFRLKSLGTKADVLHIHNGMWKTPVERCFMWLGGFRSSELLKIIKNHLEPLTDQQLMGIYNLQQSSQQAEDALSQGLEALQQSLVETLSSISLGPTDSGNVVDYMGQMALAMGKLADLESFVRQADLLKQQTLQQLQRILTTRQTARALLVQTDYISRLRALSSLWLARPRE* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0707 460 ProSiteProfiles DOG1 domain profile. 241 457 IPR025422 GO:0006351|GO:0043565
Gso1g0707 460 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351|GO:0043565
Gso1g0707 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Gso1g0707 460 Gene3D - 177 224 - -
Gso1g0707 460 PANTHER TRANSCRIPTION FACTOR TGA9 177 460 - -
Gso1g0707 460 PANTHER TRANSCRIPTION FACTOR TGA9 65 175 - -
Gso1g0707 460 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 65 175 - -
Gso1g0707 460 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 177 460 - -
Gso1g0707 460 SMART brlzneu 172 241 IPR004827 GO:0003700|GO:0006355
Gso1g0707 460 CDD bZIP_HBP1b-like 178 228 - -
Gso1g0707 460 MobiDBLite consensus disorder prediction 151 165 - -
Gso1g0707 460 Coils Coil 195 222 - -
Gso1g0707 460 SUPERFAMILY Leucine zipper domain 178 219 IPR046347 GO:0003700|GO:0006355
Gso1g0707 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 218 IPR004827 GO:0003700|GO:0006355
Gso1g0707 460 MobiDBLite consensus disorder prediction 148 171 - -
Gso1g0707 460 Pfam bZIP transcription factor 179 214 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0707 Gso-Chr1 23993463 24000217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0707 31 460 bZIP Transcription Factor Family AT1G68640 54.140 5.23e-152 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso1g0707 DOG1 1.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0707 1 23993463 24000217 Gso2g0813 2 8751406 8758003 GST