Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0425 ATGTCTGAGGTTGTTATTAAAGACTCTGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCCCGCAACACCAAAAACGAGGTTTCTCCTGATGAACCTGCTCCTCCTGAAGATTCATCTTCATCTTTTCCACGTGAAGTGAGCTCCACAACGGAATATGATGCTGGGGATAAGAAACCATCAAGGAAAGAACTCACCTCAACACAAGAAGACGTGGAGGCCTCACACCAAACCCTAGAGGAAACAAAATCTCCGACATCATCATCATGCAATCTCGAGAACCCCAAGACCCCCTCAACAGAAAGAGAAACTTCCATTCTGAAATCCTTCAAAAACGGACACCAAAGCGACACAACAACAACATGCCCATCACAGGACAAAACTCCAAAGAAACCAGACAAGGTGCTTCCATGCCCTCGATGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTCAACCAACCGCGCCACTTCTGCAAGCATTGCCAGAGATATTGGACCGCCGGAGGAACCATGAGGAACGTGCCAGTCGGTGCCGGCCGCCGCAAGAACAAGAACACTCCCTCTGTGTCGCATTTTCGCCAAATCATGGTGCCTGAGGGCCTTCAGAACGGATCATTGCACGGCGCTGTGTTGACCTTTGGATCAGATTCTCCTCTATGTGATTCCATGGCTTCTGTATTGAGCCTTGCTGAGAAAACAACACAAAATGGTGTCCTAAATGGTTTCCATTCACCTAATACTAATACTATTACTAGTAATAAAGGGGATGAATATTATGATACTGTTATGGGTTCAACTTTGAGTGAAAAGAGACACAATGCAACTACTAGTACTAACTCACATGAAAAATCATTGGATAATCATAAGAGTTATCATCATCAAGGTTTCACTCCTCAATTGTGCTTCCCAGGTTCTTCTTCTTCTTCTCCTTGGCCTTATCCATGGAACCCTACAAAGACTCCTTCAGCTTTTTGCAACCCTGTGCCATTCTACACTACACAAGCATTCTGGGGTTGCATGCCACCACCCTCTTGGAGTGTAAATTACCAATCTGCCCCTAGTTCTGGCCCAAATTCCCCTACCTTAGGGAAACACTCAAGAGATGGGGATATCTTGTTTCAAAAACCTAGCACAGACATGGCAGAAAATAACAACAACAACAACACCGTGTTGATACCAAAGACACTGAGAATTGATGACCCTACTGAAGCTGCAAAGAGCTCCATATGGTCAACACTGGGGATCAAGAATGAGAAGGGAAACTCCCTCAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGTAGTAGTGATGAGAAGAAGAATAACCATGTGATGATGGTTGAAGCATCCCTATCCCCGGTGTTGCAAGCCAACCCAGCAGCTTTGTCAAGGTCCCTTGTCTTCCATGAGAGGACATAA 1440 0.4535 MSEVVIKDSAIKLFGRTISLPRNTKNEVSPDEPAPPEDSSSSFPREVSSTTEYDAGDKKPSRKELTSTQEDVEASHQTLEETKSPTSSSCNLENPKTPSTERETSILKSFKNGHQSDTTTTCPSQDKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNTPSVSHFRQIMVPEGLQNGSLHGAVLTFGSDSPLCDSMASVLSLAEKTTQNGVLNGFHSPNTNTITSNKGDEYYDTVMGSTLSEKRHNATTSTNSHEKSLDNHKSYHHQGFTPQLCFPGSSSSSPWPYPWNPTKTPSAFCNPVPFYTTQAFWGCMPPPSWSVNYQSAPSSGPNSPTLGKHSRDGDILFQKPSTDMAENNNNNNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGSSDEKKNNHVMMVEASLSPVLQANPAALSRSLVFHERT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0425 479 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Gso1g0425 479 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Gso1g0425 479 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 6 479 - -
Gso1g0425 479 PANTHER CYCLIC DOF FACTOR 2 6 479 IPR045174 GO:0003700|GO:0006355
Gso1g0425 479 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Gso1g0425 479 MobiDBLite consensus disorder prediction 79 126 - -
Gso1g0425 479 MobiDBLite consensus disorder prediction 14 134 - -
Gso1g0425 479 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0425 Gso-Chr1 5819618 5823193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0425 7 478 C2C2-Dof Transcription Factor Family AT3G47500 38.697 2.04e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso1g0425 zf-Dof 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0425 - - gmx:100775201 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0425 1 5819618 5823193 Gso2g0912 2 10409080 10412831 GST
Gso1g0425 1 5819618 5823193 Gso5g0215 5 2258870 2261657 PCT
Gso1g0425 1 5819618 5823193 Gso17g0848 17 7954732 7958016 PCT