Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0188 ATGTCACCCGATGACACACCACCTCCAAAGCCTGCCACAGCAAAAGACCAAGAGACTCAAAGTTCCGGTGGTGGCAGAAAAAGCTCCTCCACAAGGCCCCAAGAGCAAGGTCTCAAGTGTCCACGATGTGACTCACCTAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGCAACGTCCCTATTGGCGGTGGTTGTAGAAAGAACAAGAAGGTGAAGTCATCAAGGCTCTCATGTGACTCAAAAGACTCTGGTTCCTCCTCTTCAGAACTTGGTGGCCTCAAATTCCTTCATTCTCTTTCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCATCACCCTCCAACCCCTTACAACCACTTTTCCTCTTTTGGAGACACTTCTAGTGCTTCTTCATGTTTCAACCTTGATCCTTCTCCTGGCACCACCCCATCAAGTTCTTTTGCTGCTCTCAATAATTACCCTTTTTCTTACAATGGTGCAATCCAAGGTATGAGCTCTTTGAATGTTCATAGCGGCCTTGCCTCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGGCAATGCTCTTTGGTGGAGACAACAACAACCAGAAAGATCATAGTGGTGTTAACCAGATTGAGAACCTGGCACAGAAACCACAACCCATTATGTTTCAGAACCTTGAGATTTCAAAGCCAGGGACTTTCCCAGTTGGGAACTCCAGAAAAGAACAAGGTTCAAGTGGGGACACACACACGCCTTCAACCGAGTGGTTCTTTGGGAATTCTTATGCCTCAGTGACTCCTACACCTACAACTAGTAGTGGTGGCCCAGGGAATGATAATGCGAGCAATTGGAGTAGCGGTGGTGTCCATGCTTGGGGTGATGTGCCGCAGCAATATAGTGCTTTGCCCTAG 1014 0.4783 MSPDDTPPPKPATAKDQETQSSGGGRKSSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSSELGGLKFLHSLSPSMDFHLGGLPFPRLHHHHPPTPYNHFSSFGDTSSASSCFNLDPSPGTTPSSSFAALNNYPFSYNGAIQGMSSLNVHSGLASSIESLSSINQDLHWKLQQQRLAMLFGGDNNNQKDHSGVNQIENLAQKPQPIMFQNLEISKPGTFPVGNSRKEQGSSGDTHTPSTEWFFGNSYASVTPTPTTSSGGPGNDNASNWSSGGVHAWGDVPQQYSALP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0188 337 MobiDBLite consensus disorder prediction 13 36 - -
Gso1g0188 337 MobiDBLite consensus disorder prediction 1 40 - -
Gso1g0188 337 MobiDBLite consensus disorder prediction 266 337 - -
Gso1g0188 337 MobiDBLite consensus disorder prediction 270 321 - -
Gso1g0188 337 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Gso1g0188 337 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Gso1g0188 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 337 IPR045174 GO:0003700|GO:0006355
Gso1g0188 337 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 17 337 - -
Gso1g0188 337 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0188 Gso-Chr1 2153314 2155028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0188 5 337 C2C2-Dof Transcription Factor Family AT5G65590 39.883 2.66e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso1g0188 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0188 - - gmx:100780729 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0188 1 2153314 2155028 Gso9g1659 9 40922894 40924720 GST