Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2167 ATGGAAGATATCGGTCCGAACTCATGCACGAGGCAAGTGGCAGAGAAGAAAGCAAGACCTCAAGAGCAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTATAGTCTCACACAGCCCAGATACATCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTCAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAGAACAAGAGGGTCACCTCATCAAAGGTTCCTCCTGACTTGAATCCACCAAGCCTCTCATCAGTCTCAGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTAGCTTTTCCTACAGCTATGGACAATTATCATGGCATGTCTCCATATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATAGTCACCACCATAGCCCTTCTGCTGTTGAGCTACTACGGTCTGGCATGGCTTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAACCTCAGATCATTCCCTTTATACAACTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGGTTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGTGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCGGGTGTTGAAGTGGAACACATTAAAGAACGAGGAAACAATTCAACTGGATATTGGACTGGTTGGTGA 759 0.4427 MEDIGPNSCTRQVAEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYICKTCRRYWTEGGSLRNVPVGGGSRKNKRVTSSKVPPDLNPPSLSSVSAISSQNPKMQGVHDLNLAFPTAMDNYHGMSPYVEMPKLEIGGDHSTSHSHHHSPSAVELLRSGMASRGLNPYAPNSLMSTSDHSLYTTGYPMQEIKPNLSFSVDDGFGNRSYGVQENGGGRLLFPFGDIKHLSAGVEVEHIKERGNNSTGYWTGW* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2167 252 MobiDBLite consensus disorder prediction 75 99 - -
Gso19g2167 252 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Gso19g2167 252 MobiDBLite consensus disorder prediction 65 99 - -
Gso19g2167 252 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Gso19g2167 252 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Gso19g2167 252 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 251 IPR045174 GO:0003700|GO:0006355
Gso19g2167 252 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 7 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2167 Gso-Chr19 50142971 50145051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2167 13 251 C2C2-Dof Transcription Factor Family AT3G61850 47.909 8.98e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso19g2167 zf-Dof 8.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2167 - - gmx:778111 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2167 19 50142971 50145051 Gso3g2207 3 47240860 47242950 GST
Gso19g2167 19 50142971 50145051 Gso7g0479 7 4749889 4752011 PCT
Gso19g2167 19 50142971 50145051 Gso16g0186 16 2117185 2119511 PCT
Gso7g0479 7 4749889 4752011 Gso19g2167 19 50142971 50145051 PCT
Gso16g0186 16 2117185 2119511 Gso19g2167 19 50142971 50145051 PCT