Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1679 ATGATGGAGAAATGGTGGAAGGCTAATAATGTTGAGATTTCACCAAATTGTCCTAGGTGTGGTTCTACCAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGATACTGGACCAAAGGAGGATCCCTCCGCAACGTGCCGGTTGGTGGTGGCTGCCGCAAAAGTAGAAGCGCTAAGTATAATAAGACCTTCAGACAAGCCAATAACTCAGTTGGCTATTCTGATGATTTAATGGCCTCACCTAATTCAGTGGTGTCAGATGCTCCAAGTATTGATCTAGCACAAGTTTATGCGAGTTTTCTCAACCAGAAGCCAGATCAAGCCGTCCAAACAGTTCGCTATCCTAACGAACCAGATTATTATTCATGCCTATTGAACACTACTGATTTTGGCCATAGTGCTCTCTCTGAAGAAGAACTTGGTCTCACTGATTGTTTGCATTTTCATGAACAATCCACAGAATCACATTTCGGTGAGAGTTTCCAAATGTATCTTTTCGGGTTCAACTCTATCCATAATCATCAAGAATATTACAGTAGCAGTTATGATACCACAAATAATACAAATTTTGAGTTGCCACAGTTGCCTGGTGAAGAGACAGAAATCTCACACGGTGATATGTTGTGGTCCAAATCCAATTCTGAGATGATGCTCGATCATGCTTTGCAAGCCTCCCAACCGCCCCTTTTTGGACCTCAATCTCATGATGCAGACTTCATTATGGGAAATTGTTGGAGCCACTTCGATTTGCCAAGGGATGCTTCTTTTTCCACGCTTTGA 816 0.424 MMEKWWKANNVEISPNCPRCGSTNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRSAKYNKTFRQANNSVGYSDDLMASPNSVVSDAPSIDLAQVYASFLNQKPDQAVQTVRYPNEPDYYSCLLNTTDFGHSALSEEELGLTDCLHFHEQSTESHFGESFQMYLFGFNSIHNHQEYYSSSYDTTNNTNFELPQLPGEETEISHGDMLWSKSNSEMMLDHALQASQPPLFGPQSHDADFIMGNCWSHFDLPRDASFSTL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1679 271 Pfam Dof domain, zinc finger 16 69 IPR003851 GO:0003677|GO:0006355
Gso19g1679 271 ProSiteProfiles Zinc finger Dof-type profile. 15 69 IPR003851 GO:0003677|GO:0006355
Gso19g1679 271 ProSitePatterns Zinc finger Dof-type signature. 17 53 IPR003851 GO:0003677|GO:0006355
Gso19g1679 271 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 2 267 - -
Gso19g1679 271 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 267 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1679 Gso-Chr19 45709055 45710023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1679 6 266 C2C2-Dof Transcription Factor Family AT3G52440 39.643 3.45e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso19g1679 zf-Dof 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1679 - - gmx:100812522 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1679 19 45709055 45710023 Gso2g1661 2 39157071 39157994 PCT
Gso19g1679 19 45709055 45710023 Gso10g0719 10 9955358 9956712 PCT
Gso2g1661 2 39157071 39157994 Gso19g1679 19 45709055 45710023 PCT
Gso10g0719 10 9955358 9956712 Gso19g1679 19 45709055 45710023 PCT