Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0997 ATGTCTCAGAAAGAGAAGGGTCCGGGTATCAGGCTATTTGGAAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCAAACTCTGGACCCACGGATACTTGCTGCAGCATAAAGAAAACAGAACTCAAAATACCTAGTGAATGTGGAGAAAACTCTGAGCAACAAGAAAATTCTTCTGATTCAAGGGATAGTAAACAAGAGTCCCAACATAAAGTGCAGGAAAATGAGCCAATTGTAAATCCCAAGCCTGTGGAAGATAATATGGAGACTGGTAGCTCTGATCAAGATAAAGTCTTAAAGAAACCCGACAAGATTCTTCAGTGCCCACGATGCAACAGTATGGACACCAAGTTTTGTTATTTTAATAACTACAATGTCAATCAACCTCGACACTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAATAAGCACCTAGCCTCTCAATACCAACACATTATCGTAACCTCTGATGGAATTCCAGCCTCCAGGCTAGAAACCACAGACTCGTCTGGTCTCCAACAGCAACATATTGCTAGTCTTGAATCCTCAGTTTCTTTCAGGTCTTCAGCAGATAATGGCACCGTGTTGAAATTTGGTACCGATACCCCTCTTTGCAAATCGATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATGTGCTGATGCAAGTTCTATCAGCTGTGTAGAGTATAGAGGGGAACCATCCTTATGTGGATCTTCTGTGATGACTAATGGTGCTCAAGGAAATGAATTATCAGAACATAATACATCAAATTGGTTGCAATGTTACCCTGTTCCTCCATGGGTATTACCTTATCCAGGTTGGAATAATGTGAATTCCATGGAAGCGGTTCATCGATCTTCAGCACCAATGTGCAATCCATATAATAACACTGGTCCTACAGCAATGCAATGGTGTCCCACACCAATGGTTGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAATTTGTACCACCATCATACTGGAGTGGAACGCCACTTTGGAATGCTGGAACTGGGGCAGTGTCAATAGGATCCAATGCTTGCCTTTCGCCGACTTCCTCGACTAATAACAGTTGCTGCTCAGGCAATGGCTCACCAACACTTGGAAAGCACACTAGAGATACAGTTTGCACTGATGAAGAGAAATCAGAAAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGAGGCCCCAAATGAGGCCTCAAAAAGTCCTATAATAAGAGCTACATTAGCTATCAAGCTTGATAAGCAGCAATTTGTATCAAATGGTGATATTTTGAAAAAAATTGAACCAAAAGAAGGCAAAGATCGTGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCGGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCTTATAG 1452 0.4298 MSQKEKGPGIRLFGRKIPVPECQIPANSGPTDTCCSIKKTELKIPSECGENSEQQENSSDSRDSKQESQHKVQENEPIVNPKPVEDNMETGSSDQDKVLKKPDKILQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYQHIIVTSDGIPASRLETTDSSGLQQQHIASLESSVSFRSSADNGTVLKFGTDTPLCKSMDSMLNLRDQRRCADASSISCVEYRGEPSLCGSSVMTNGAQGNELSEHNTSNWLQCYPVPPWVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPTAMQWCPTPMVAIPGMCPPSIPLQFVPPSYWSGTPLWNAGTGAVSIGSNACLSPTSSTNNSCCSGNGSPTLGKHTRDTVCTDEEKSEKCVLVPKTIRIEAPNEASKSPIIRATLAIKLDKQQFVSNGDILKKIEPKEGKDRVLGASQILEANPAAISRAHAFQESL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0997 483 MobiDBLite consensus disorder prediction 56 72 - -
Gso19g0997 483 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Gso19g0997 483 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 482 - -
Gso19g0997 483 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Gso19g0997 483 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Gso19g0997 483 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Gso19g0997 483 MobiDBLite consensus disorder prediction 46 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0997 Gso-Chr19 37416830 37419853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0997 8 482 C2C2-Dof Transcription Factor Family AT5G39660 34.078 1.29e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso19g0997 zf-Dof 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0997 - - gmx:100813787 971.074