Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0206 ATGTTGGAGTCAAAAGACTCGACGATGAAGCTCTTCGGGAAGACGATCCCTGCGCCGGAGATCTCCGCCGGAGCTCCGGCATTGTCTTCTGGTGATGCTGATGCTGTTGGTGTTGTTCAGAACCATGGTTCTTCAAGTGTCAATGGGGATGGTGAAGAGCACGAGATTGAGCAGGACATAATGGGAGAGGAAACAACTGAGAGTGAGAAGGAAGATGAAGTGACCAATCTTGATACTGTCTCAAGACCAGGGGAAGTGTCTATTAACCCCTCTACCAAGAAGGAGGATCTTACATTGAAAACTTCAAAAAAGACCGAACAAGAACAAGGTGAAAATTCCCAAGATAAAACACTGAGAAAGCCGGACAAAATACTGCCTTGCCCCCGCTGCAATAGCATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCATTTCTGCAAGAATTGTCAGAGATACTGGACTGCCGGTGGAGTGATGAGGAATGTTCCTGTGGGTGCTGGTCGCAGGAAGAACAAGAATTTTACTTCTCAGTATCGTCAGATAACTGTTCCTGAAGCAGCACTCTTGAGTTCTCAGCCGGACTTGCCAAATGGAGTCAGTCATCCTTCCTTGAACTGTAATGCCACACTCCTTGCATTTGGGTCTGATACACCCTTGTGTGAATCAATGACATCTGTTTTGAACCTTGCTGAAAAAGCAGTGAACAATTCCACAACAAATGGATTTAATGGCTCAGAAGAACTAGAAATTCCTTTTGCTTATGTTGCTGGAGAAAAAGTGAATGATGATTCCAATAAATCTTCTGACATGTCAACAAAGCCAATGGAAGGTGAAACCACCAATAGGTCCCAAGAACAAGTCATAGAGAATTGTCATCCCTTCCCACCTCATGCTCCCTACTTTCCTGGTGCCCCTTGGCCTTTCCCATGGAATCCAGCACTGTGGAACTCCCCGGTACCATCACCACCTGCTTTTTTCCCACAAGGATTTACCATGCCTCTCTATCCTGCAGCAGCTTATTGGGGTCTTACTATACCGGGTGCATGGAGCATCCCATGGCTAGCGCAACCATCATTACCAAATAGCACAGTGTCTAACTCTGGTCCAGACCCCATTGCCCGAACCATAGCCATGTCTTGA 1158 0.4637 MLESKDSTMKLFGKTIPAPEISAGAPALSSGDADAVGVVQNHGSSSVNGDGEEHEIEQDIMGEETTESEKEDEVTNLDTVSRPGEVSINPSTKKEDLTLKTSKKTEQEQGENSQDKTLRKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRRKNKNFTSQYRQITVPEAALLSSQPDLPNGVSHPSLNCNATLLAFGSDTPLCESMTSVLNLAEKAVNNSTTNGFNGSEELEIPFAYVAGEKVNDDSNKSSDMSTKPMEGETTNRSQEQVIENCHPFPPHAPYFPGAPWPFPWNPALWNSPVPSPPAFFPQGFTMPLYPAAAYWGLTIPGAWSIPWLAQPSLPNSTVSNSGPDPIARTIAMS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0206 385 MobiDBLite consensus disorder prediction 96 123 - -
Gso19g0206 385 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Gso19g0206 385 PANTHER CYCLIC DOF FACTOR 2 1 369 IPR045174 GO:0003700|GO:0006355
Gso19g0206 385 MobiDBLite consensus disorder prediction 273 290 - -
Gso19g0206 385 MobiDBLite consensus disorder prediction 56 71 - -
Gso19g0206 385 MobiDBLite consensus disorder prediction 80 95 - -
Gso19g0206 385 MobiDBLite consensus disorder prediction 38 123 - -
Gso19g0206 385 MobiDBLite consensus disorder prediction 267 290 - -
Gso19g0206 385 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 369 - -
Gso19g0206 385 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Gso19g0206 385 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0206 Gso-Chr19 2687206 2690578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0206 6 373 C2C2-Dof Transcription Factor Family AT5G39660 37.755 5.72e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso19g0206 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0206 - - gmx:778120 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0206 19 2687206 2690578 Gso6g1639 6 17408533 17411743 ECH
Gso19g0206 19 2687206 2690578 Gso19g0206 19 2687206 2690578 ECH