Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2389 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAACCTAATCAGCTAGCAAGAATTGGCACCCAGAATCCCCAGATTCCACTACCTCCGCAACGGCCACCACCTTCATCGGTGGCGGCCGCTATCGGAAATGGTGGCTATCAGGGCTCTATCAGACCAGGATCAATGGCTGATAGAGCCAGGATGGCAAAGATACACCAACCCGATGCATCACTCAAATGTCCACGATGTGAATCTACAAACACAAAGTTTTGCTACTACAACAACTACAGCCTCTCACAGCCTCGCCACTTTTGCAAGACATGTCGTCGTTACTGGACCAGAGGAGGTGCACTCAGGAGCGTGCCAGTTGGAGGTGGCTGCAGAAGGAACAAAAGAAACAAAGGGAACAGTGCTAGATCAAAGTCTCCTATGAAACCTTCAACAGGTTCTACCTCAGCCAGTGCTAACTCTTCTTCTAGTGGCTGCACCCCTGATCATGTGATGATGACTCATTTGCCAACTCCAACACCAGCTCATCAATTCCCATTCTTGGCCTCTTTACATCATTATAACAGTGACTACGCTTCTGGGGGCATTGGATCTCATTTGGGGGCGATCACAACACCTTTGGTGGCTAGAAATGGCAACACTACTAGTGATGTTGAGTTTCAAATCGGAACTAGTTCAGCTTCATCACTTGGTAATAGTGGTGGAGGGGCTATGTTGTCAAATAATGGCCTTGGTGAGCAATTGAGGTTTAACAATCTGCAACAAGTTCAACATCAGTTCCCTTTCTTTAGTACTAATTTGGAGCCACAACTTGGGGTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGTTGAACCGCCAAATTATGCAAAGAATGGAGGCCGGTTTGATATTCGTTCTAAAATGGATTCTATTTCTAGTGTAAGTGGAACATTACCTCAGCTTAACACAATAAAGCTGGAAGAAAATCAAGGTTTGAGTTTGCCAAAAAATCTCTTGATGACTAGTTCGGGAAATGGTGTACTTTGGAATGGAAGTAGTGGCAATGCATGGAGTGAAGTTCCTAGTTTCACTCCTTCACCTAACCACTTGTTGTGA 1110 0.4541 MVFPSLPIYLDPPNWSQQQPNQLARIGTQNPQIPLPPQRPPPSSVAAAIGNGGYQGSIRPGSMADRARMAKIHQPDASLKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRNKGNSARSKSPMKPSTGSTSASANSSSSGCTPDHVMMTHLPTPTPAHQFPFLASLHHYNSDYASGGIGSHLGAITTPLVARNGNTTSDVEFQIGTSSASSLGNSGGGAMLSNNGLGEQLRFNNLQQVQHQFPFFSTNLEPQLGVFQFGGGENNNVEPPNYAKNGGRFDIRSKMDSISSVSGTLPQLNTIKLEENQGLSLPKNLLMTSSGNGVLWNGSSGNAWSEVPSFTPSPNHLL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2389 369 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 11 364 - -
Gso18g2389 369 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 364 IPR045174 GO:0003700|GO:0006355
Gso18g2389 369 MobiDBLite consensus disorder prediction 140 166 - -
Gso18g2389 369 MobiDBLite consensus disorder prediction 123 168 - -
Gso18g2389 369 Pfam Dof domain, zinc finger 77 133 IPR003851 GO:0003677|GO:0006355
Gso18g2389 369 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Gso18g2389 369 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2389 Gso-Chr18 56652678 56654756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2389 1 135 C2C2-Dof Transcription Factor Family AT2G37590 57.931 5.52e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso18g2389 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2389 - - gmx:102662809 699.893