Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2161 ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCTACTATGGCAGTCATTGCACTTAAGTGCCCATCCATTGAAGTTGCTGTTGTTGATATCTCTAAATCCCGCATTGCAGCCTGGAACAGTGACCAGCTTCCTATCTATGAACCTGGCCTTGATGGTGTTGTGAAGCAATGCCGTGGCAAGAACCTCTTCTTCAGCACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTCAACACCCCAACCAAAACTCAGGGTCTTGGAGCTGGTAAAGCAGCAGATTTGACATATTGGGAGAGCGCAGCTCGCATGATTGCTGATGTTTCGAAGTCTGACAAGATCGTTGTAGAGAAATCCACAGTCCCGGTTAAAACAGCTGAGGCAATAGAGAAGATTCTGACCCACAATAGCAAGGGAATCAGATTCCAGATTTTATCAAACCCTGAATTCCTTGCTGAGGGAACTGCAATCAAAGATCTCTTTAACCCAGACCGTGTTCTTATTGGAGGCAGGGAAACCCCAGAGGGCCAAAAAGCTATTCAAGCATTGAAGGATGTTTATGCTCAATGGGTCCCCGAAGAAAGAATACTAACCACAAATCTCTGGTCGGCAGAACTATCTAAGCTTGCAGCTAATGCCTTCTTGGCCCAAAGGATTTCATCTGTCAATGCCATGTCAGCACTTTGTGAGGCTACCGGGGCAAATGTTCAACAGGTGTCCTATTCTGTTGGAACAGACTCAAGGATTGGACCCAAGTTCCTCAACGCCAGTGTTGGTTTTGGTGGATCCTGCTTCCAGAAGGATATCTTGAACCTTGTTTACATCTGCGAGTGCAATGGCCTTCCCGAGGTGGCTGAGTACTGGAAACAAGTTATCAAGATCAATGATTATCAGAAGAGCCGTTTTGTGAACCGTGTAGTTGCATCAATGTTCAACACAGTCTCAAACAAAAAGATTGCTATTCTGGGATTTGCCTTCAAGAAAGACACTGGTGACACTAGGGAGACCCCTGCCATTGATGTATGCCAGGGGCTACTTGGTGATAAGGCCAACCTGAGCATATACGATCCACAAGTAACTGAGGACCAAATTCAGAGGGATCTATCAATGAACAAGTTTGATTGGGATCATCCTATCCACTTGCAGCCCACAAGTCCTACTACTGTGAAGAAGGTCAGTGTTGTTTGGGATGCCTATGAAGCAACAAAGGATGCACATGGCCTTTGCATTCTAACCGAGTGGGATGAGTTCAAGACTCTCGACTACCAGAGGATATTTGACAACATGCAAAAACCAGCATTTGTTTTTGATGGCAGAAACATTGTGGATGCTGATAAGTTGCGTGAGATTGGCTTCATAGTTTACTCAATTGGTAAGCCACTGGATCCATGGCTCAAAGACATGCCTGCTTTGGCGTAA 1443 0.4553 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIRFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQALKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPALA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2161 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Gso18g2161 480 Gene3D - 209 240 - -
Gso18g2161 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Gso18g2161 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Gso18g2161 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Gso18g2161 480 Gene3D - 241 476 - -
Gso18g2161 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Gso18g2161 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Gso18g2161 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Gso18g2161 480 Gene3D - 1 208 - -
Gso18g2161 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 314 463 IPR036220 -
Gso18g2161 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Gso18g2161 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 480 - -
Gso18g2161 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Gso18g2161 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2161 Gso-Chr18 54666243 54669018 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2161 18 54666243 54669018 Gso8g2005 8 20846597 20849385 GST
Gso13g0387 13 15515081 15518042 Gso18g2161 18 54666243 54669018 PCT
Gso19g0249 19 3569513 3572509 Gso18g2161 18 54666243 54669018 PCT
Gso18g2161 18 54666243 54669018 Gso13g0387 13 15515081 15518042 PCT
Gso18g2161 18 54666243 54669018 Gso19g0249 19 3569513 3572509 PCT