Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso18g2147 | ATGCAAATGCAAGTTCCGGTGGGAGGGCGAGTCCCCACATGGTTCTCTCGGCGAAGACTCCTCGAAGAGAAGCTCTGCGACCTCCACAAGTGCACCAATTTGGACTCTGTGAACCAAATCCACGCCCAAGTCCTCAAAGCCAATCTCCACCAAGACCTCTTCGTCGCTCCCAAACTCATCGCCGCCTTCTCCCTCTGCCGCCACCTCGCCTCCGCTGTCAACGTCTTCAACCACGTCCCCCACCCCAACGTCCACCTCTACAACTCCATCATCAGAGCCCACGCCCACAACAGTTCCCACCGTTCTCTCCCCTTCAACGCTTTCTTCCAAATGCAGAAAAACGGACTCTTTCCTGATAATTTCACGTACCCTTTTCTCCTTAAGGCTTGTTCTGGCCCCTCCTCGCTTCCTTTGGTCCGAATGATCCATGCCCATGTTGAAAAAATTGGTTTTTATGGGGATATCTTTGTGCCCAATTCGCTTATTGACTCCTACTCCAGGTGCGGGAATGCCGGGCTTGATGGGGCCATGAGCTTGTTTTTGGCCATGGAGGAGAGGGATGTGGTCACTTGGAACTCCATGATTGGTGGGTTGGTCAGATGTGGTGAGTTGCAGGGTGCGTGTAAGCTGTTTGATGAAATGCCTGACAGGGATATGGTTAGTTGGAACACCATGTTGGATGGGTACGCCAAGGCGGGGGAGATGGACACGGCGTTTGAGCTGTTTGAGAGAATGCCTTGGAGGAATATCGTCTCGTGGTCGACGATGGTTTGCGGGTATAGTAAGGGTGGTGACATGGATATGGCGAGGATGTTGTTTGACAGGTGTCCGGTGAAGAATGTGGTGCTTTGGACAACAATAATAGCGGGATATGCTGAAAAGGGGCTTGCGAGGGAGGCAACGGAGTTGTATGGGAAAATGGAGGAGGCTGGGATGAGGCCCGATGATGGGTTTTTGCTTAGCATTCTGGCGGCGTGTGCTGAGTCTGGAATGCTCGGATTGGGGAAGAGAATTCATGCGTCTATGAGGAGGTGGAGGTTTAGATGTGGCGCTAAGGTGTTGAATGCGTTTATTGATATGTATGCCAAGTGTGGTTGTTTGGATGCTGCCTTTGATGTCTTTAGTGGAATGATGGCAAAGAAAGATGTGGTGTCTTGGAATTCCATGATCCAGGGGTTTGCCATGCATGGACATGGCGAGAAAGCACTTGAGCTCTTTTCTTGGATGGTACAGGAAGGTTTTGAGCCAGATACGTATACATTTGTTGGCCTTTTGTGTGCTTGCACTCATGCTGGCCTTGTTAATGAAGGGCGTAAATACTTTTATTCAATGGAGAAAGTATATGGGATTGTTCCTCAAGTTGAGCATTATGGTTGTATGATGGACCTTCTTGGACGCGGGGGACACCTAAAAGAAGCTTTCATGCTTCTGCGCAGCATGCCTATGGAACCAAATGCCATTATATTGGGTACTCTTCTGAATGCTTGTCGGATGCATAATGATGTAGATCTTGCAAGAGCTGTGTGTGAACAGCTGTTTAAGTTGGAGCCATCGGACCCTGGGAATTACTCCCTTCTGTCAAATATTTATGCTCAAGCAGGAGATTGGATGAATGTTGCCAATGTGAGGTTACAAATGAAGAATACAGGAGGTGAAAAGCCTTCTGGGGCTAGTTCCATAGAGGTAGAAGAAGAAGTGCATGAATTTACTGTATTTGATCAGTCGCACCCTAAATCAGATGATATATATCAGATGATTGACAGATTAGTACAGGACCTCAGGCAGGTTGGATATGTTCCAATGATACATCAGTAG | 1815 | 0.4843 | MQMQVPVGGRVPTWFSRRRLLEEKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGYVPMIHQ* | 605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso18g2147 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 217 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | E motif | 499 | 561 | IPR046848 | - | |
| Gso18g2147 | 604 | Gene3D | Tetratricopeptide repeat domain | 249 | 344 | IPR011990 | GO:0005515 | |
| Gso18g2147 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 245 | IPR002885 | - | |
| Gso18g2147 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 384 | 418 | IPR002885 | - | |
| Gso18g2147 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 251 | 275 | IPR002885 | - | |
| Gso18g2147 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 354 | 380 | IPR002885 | - | |
| Gso18g2147 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 189 | 219 | IPR002885 | - | |
| Gso18g2147 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 282 | 315 | IPR002885 | - | |
| Gso18g2147 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 382 | 416 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat | 251 | 276 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat | 355 | 379 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat | 220 | 250 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat | 282 | 311 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat | 456 | 481 | IPR002885 | - | |
| Gso18g2147 | 604 | PANTHER | OS01G0913400 PROTEIN-RELATED | 18 | 602 | - | - | |
| Gso18g2147 | 604 | Gene3D | Tetratricopeptide repeat domain | 346 | 447 | IPR011990 | GO:0005515 | |
| Gso18g2147 | 604 | Pfam | E+ motif | 566 | 591 | IPR046849 | - | |
| Gso18g2147 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Gso18g2147 | 604 | Gene3D | Tetratricopeptide repeat domain | 448 | 579 | IPR011990 | GO:0005515 | |
| Gso18g2147 | 604 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 18 | 602 | - | - | |
| Gso18g2147 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 280 | 314 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat family | 82 | 130 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat family | 186 | 217 | IPR002885 | - | |
| Gso18g2147 | 604 | Pfam | PPR repeat family | 381 | 428 | IPR002885 | - | |
| Gso18g2147 | 604 | Gene3D | Tetratricopeptide repeat domain | 17 | 136 | IPR011990 | GO:0005515 | |
| Gso18g2147 | 604 | Gene3D | Tetratricopeptide repeat domain | 137 | 248 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso18g2147 | Gso-Chr18 | 54560815 | 54565337 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso18g2147 | 18 | 54560815 | 54565337 | Gso8g1990 | 8 | 20595648 | 20598362 | GST |