Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2124 ATGTCTGAGGTAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCCGTGCCGGAGATTCCTCGGGGATCCGCCGGAGCTCCGGCGTCGTCTTCCGGTGACGTTGTTGATGACAGTGTTGACGCTTCTTCCACCAACTCTTCAAGGGAGTCTCATACCAAGAGAGATGCACTAGGGAAAGATGTTGATAAGGACACATTGGGAGAAAAACTAACTGATGACAAGAAGGAAGATGGAGCCCCCACCCAATCATCAGAAGAGGTCACCAATCTTGATACTGCCTCTGGAAGCTGTGAAGAATCTGTTGCTCTGTCCACCGAGAGGGAGGCTACTACATTGAAAACTACGAAGACTGAAGAAGAACAGAGTGAGACAAGTAATTCACAGGATAAGAACCTAAAAAAACCAGACAAAATACTACCTTGTCCTCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTATAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGAACCATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCGGCTTCTCACTATCGTCAGATTACTGTTTCTGAAGCAGCACTCCAGAATCCTAGAACAGACTTGCCAAATGGAGCATATCATCCTTCCTTGAAGTGCAATGGTACAGTACTTACATTTGGAACTGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAACCATGCCCAATTACACAAGAAATGGATTTCATAAACCTGAGGAACTAAGAATTCCTGTTCCCCATGCCAGTGGAGAAAAAGGGGACGATCAATCTAATAAATCTTCAGTTACCTCCACAACGTCTGTAGAAGGTGCAATCACCAATGGACCCAAAGAACAAGTTGTGCAGAATTGTCAGAGCTTTCCACCACAGGTTCCCTACTTTCCAGGGACCCCTTGGCCTATCCCTTGGAATCCAGTGCAGTGGAGTTCTCCAGTACCACCGCCTGCTTTTTGTCCACCCGGATTTACCATGCCATTCTATCCTGCAACAGCTTATTGGGGTTGTGCTGTGCCAGGCACGTGGAACATCCCATGGCTAGTGCAACCATCATCACCAAATGGTGCAACACCTAACTCTGGCCCCAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGACAGCACATTCAAATCAAATGAGTCAGGTGGTGAGGATGGACACAGCAAAGAAAACAACAAAGAAAAGAGCCTGTGGGTTCCAAAAACTTTGAGGATTGATGACTCAGAAGCGGCAAAAAGCTCTATATGGGCAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTGGGGGAACTCTCTTTAAAGCCTTCCCTTCAAAGCATGATGACAAAAACCATTCAATGCAAGCCTCGCCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1506 0.4668 MSEVKDPAIKLFGKTIPVPEIPRGSAGAPASSSGDVVDDSVDASSTNSSRESHTKRDALGKDVDKDTLGEKLTDDKKEDGAPTQSSEEVTNLDTASGSCEESVALSTEREATTLKTTKTEEEQSETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNPRTDLPNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTMPNYTRNGFHKPEELRIPVPHASGEKGDDQSNKSSVTSTTSVEGAITNGPKEQVVQNCQSFPPQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYPATAYWGCAVPGTWNIPWLVQPSSPNGATPNSGPNSPTLGKHSREDSTFKSNESGGEDGHSKENNKEKSLWVPKTLRIDDSEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSMQASPVLQANPAALSRSLNFHETS* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2124 501 MobiDBLite consensus disorder prediction 49 83 - -
Gso18g2124 501 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Gso18g2124 501 MobiDBLite consensus disorder prediction 84 112 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 274 303 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 381 424 - -
Gso18g2124 501 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Gso18g2124 501 MobiDBLite consensus disorder prediction 1 141 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 284 303 - -
Gso18g2124 501 PANTHER CYCLIC DOF FACTOR 2 1 500 IPR045174 GO:0003700|GO:0006355
Gso18g2124 501 MobiDBLite consensus disorder prediction 399 424 - -
Gso18g2124 501 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 500 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 457 501 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 478 501 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 113 139 - -
Gso18g2124 501 MobiDBLite consensus disorder prediction 381 398 - -
Gso18g2124 501 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2124 Gso-Chr18 54321503 54325537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2124 4 501 C2C2-Dof Transcription Factor Family AT5G39660 45.936 7.91e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso18g2124 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2124 - - gmx:100788247 958.747