Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1430 ATGGCTTATACTTCTATCCCATCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCAAGGCAACAACACTGCTGCCAGCTCACACCTTATTCTGCCACCACCAATACAACCGCCGCCGCCTCCGCCATCGCAACCTCATGGACTCAGCGGTAGCACTACCGCCGGGTCCATCAGGCCCGGTTCGATGGCAGATAGAGCGAGGATGGCCAACATACAGGAAGCTCCACAAAAGTGTCCAAGATGTGAATCCACCAACACGAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGTCACTTCTGCAAGGCCTGCAGAAGGTACTGGACACGTGGCGGGACCTTGAGGAATGTCCCCGTAGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCAGCAGCAACACCAGGTCGCCGGCAAACTCCGATCGCCAAACCGCGAGTGCCGGCTCCGCTTCAACCACCAGTGGCTCCTCTTCTGCTGACTTGGTGGCCAGCCTCGGTGGCGGCACCGGGGTGCCACCGTCTCTTAGGTTCATGGCTCCATTGCATCAACTTGGGGACCACCACCACCTTGGTGGTGGTGGAGGAGAAATAGGGTTAAGCTATGGCTTGAACTATGGCGCAATTTCTGGTCCAATGGGAGGAATAGGAGACTTGAATTTCCATATAGGAGGCACTTTGAGTGGGGGTGGTTCTATGTTATCTGGTTTGGACCAATGGAGGGTTCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTACTTCATCACATGGGTTGTACCCTTTTGAAGGTGCTAGTGGCAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGCATTATTTCTCAGCTTGCTTCTGTGAAAATGGAAGACAATCGTCATCATCATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGGGTCAATAATAACCCTAACACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGCCACTTCTACTTGGACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACTAGTAATAACGCACTATAG 1092 0.5183 MAYTSIPSYIDPANWQQQQPNHQQQGNNTAASSHLILPPPIQPPPPPPSQPHGLSGSTTAGSIRPGSMADRARMANIQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGTLRNVPVGGGCRRNKRSRGSSSSNTRSPANSDRQTASAGSASTTSGSSSADLVASLGGGTGVPPSLRFMAPLHQLGDHHHLGGGGGEIGLSYGLNYGAISGPMGGIGDLNFHIGGTLSGGGSMLSGLDQWRVPQTHQFPFLSGLEATSSHGLYPFEGASGSDGYGGTPIKVSTSGIISQLASVKMEDNRHHHHQELGLPRQFLGVNNNPNTNEQYWSGGGGATSTWTDLSAFSSSSTTSNNAL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1430 363 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Gso18g1430 363 MobiDBLite consensus disorder prediction 135 174 - -
Gso18g1430 363 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 358 - -
Gso18g1430 363 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Gso18g1430 363 MobiDBLite consensus disorder prediction 16 66 - -
Gso18g1430 363 MobiDBLite consensus disorder prediction 37 52 - -
Gso18g1430 363 MobiDBLite consensus disorder prediction 16 35 - -
Gso18g1430 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 358 IPR045174 GO:0003700|GO:0006355
Gso18g1430 363 MobiDBLite consensus disorder prediction 123 176 - -
Gso18g1430 363 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1430 Gso-Chr18 41724573 41726391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1430 1 355 C2C2-Dof Transcription Factor Family AT2G37590 40.691 1.73e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso18g1430 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1430 - - gmx:100816936 583.948