Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1269 ATGGTGCCGCCACCAGAGAACATGGCAACACCAAAAGACCAAGATGCCACACAAGGCCGAAAAATCACCACCACAACAACAAGGCCAGCGCCGGAACAAGGCGTAAAGTGCCCGCGATGCGACTCATCCAACACAAAGTTCTGCTACTACAACAACTACAGCCTCACCCAGCCCAGGCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAACGGCGGAGCCTTGCGCAGCGTCCCGATAGGCGGCGGCTGCAGGAAGAACAAAAGGGCCGTCGTCAAGCCCTCTTCCTCTTCGTCATCTTCATCACCAAGACTCTCAACCACCGAATTCAGCCTTCGCGGCCTCAACGTTCCGCCCTCGGTTGAATTCAACCTCGGCGCGTTGCCCTTCCCCTCGAGGCTCAACACAAACCACCACATTCCAACAATCATAAACACAGGGTTGTTCAACAACAACCAGTTGTCGCCTTTCCTGGACGTTAAATCAGCTTTGTTTCAACTTGACGCTCCTCCAGCTGCTCTGTCAAACTCCTTGATGGGCATTGCCCCGCCCAGCGCCCAGAACAACAACTTCTGGGCGCTGGGTCGGTCTCAAAGCTCGACACTGTCTGATCCATTAAACAGTACAATGCAGTCCATGCAGCAATCTCTGAATGTTCATAGCAGCCTTGCTTCTTCAATTGAGTCACTGAGCTGCGTCAACCGGGACTTGCACCTGAAGATGCAGCAGCAGCGTTACGCGACAATGATGTCCGGTGGGGACACCCACCACAAGGGTGATGAAAACAGTGGCGTTTCGTTTCCTCAAACGGTTAATGGGTTCGAGAATCAAAAACTGGTGATGAACCCCGTTATGTTTCAGAAGCCAGTAGAGAGCTTGCCAGCCGGCAGTGCCGTAACAGAAGGCCCAAGTGGGGCTTCAGTTACAACAGTGGCACCACCCACCGAATGGTTCTTTGGGAATTCTTCTTTTCCCTCAACAGGTAATGGTGGTGGCAATGGCAACAACAACATTAACATTAATATTAATGATGCAAACAACAATTGGAGTGATGCCCTTGCTTGGGGGAATTTTCAGCAGCAGCAACAACAATACAGTGCTTTGCCCTAG 1110 0.5189 MVPPPENMATPKDQDATQGRKITTTTTRPAPEQGVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRSVPIGGGCRKNKRAVVKPSSSSSSSSPRLSTTEFSLRGLNVPPSVEFNLGALPFPSRLNTNHHIPTIINTGLFNNNQLSPFLDVKSALFQLDAPPAALSNSLMGIAPPSAQNNNFWALGRSQSSTLSDPLNSTMQSMQQSLNVHSSLASSIESLSCVNRDLHLKMQQQRYATMMSGGDTHHKGDENSGVSFPQTVNGFENQKLVMNPVMFQKPVESLPAGSAVTEGPSGASVTTVAPPTEWFFGNSSFPSTGNGGGNGNNNINININDANNNWSDALAWGNFQQQQQQYSALP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1269 369 MobiDBLite consensus disorder prediction 1 36 - -
Gso18g1269 369 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 264 IPR045174 GO:0003700|GO:0006355
Gso18g1269 369 Pfam Dof domain, zinc finger 34 89 IPR003851 GO:0003677|GO:0006355
Gso18g1269 369 PANTHER DOF ZINC FINGER PROTEIN DOF5.7 20 264 - -
Gso18g1269 369 MobiDBLite consensus disorder prediction 11 31 - -
Gso18g1269 369 MobiDBLite consensus disorder prediction 86 106 - -
Gso18g1269 369 MobiDBLite consensus disorder prediction 91 106 - -
Gso18g1269 369 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Gso18g1269 369 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1269 Gso-Chr18 31457977 31459086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1269 7 338 C2C2-Dof Transcription Factor Family AT5G65590 33.898 7.32e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso18g1269 zf-Dof 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1269 - - gmx:102663483 696.427