Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0298 ATGGCTCCTCCCTCAGATATCAATCATCTTTCTCACCCTTGTATATACGGGGACTTTGTTTCTTCATATACAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAACATTGGGTCCAGTAGAGGAAGGGGTGGTGGTCGCCATCTGCAGCAGCCTGTAGAGGAAAACATGGTTTGGCCAGCTCCAGCTAAATCCTTGGATGATTGTGCTAGATCTCGGAAGGAGGAAGAGGATCTAGATCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACTGGATATAGATGGCGAACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAAGATCGCATGTTCTCATCTGCCCATCCACCATATGCCCCTGTACCTTTTTATACCCGGGGATATGGTATGCAATCGCATAATAGAACATGTGGAGGGTGCAACCAAGAGATACTCTATGGCAATTGTTTAGGAGTTGGTCATAATTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAAACCTGTTTTAAGGAATTGACACACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTATTGGAATCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGTCACGGGATGAAAGATACTATAGATTGGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACGGACACTGGTGAATGTCAACCCCTTTATCATGCTATCAGAGACTATTATGAAGGAATGAATATGAAAATTGATCAACAAGTCCCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGCTTCCATCACTTACCAGAAACAAGGGGATTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTATATAGATGGCCAAAAATTGGAGGCCATCGATTAATAGGCATGAGATCTCAAGCTCAACGGCTGCCTAGAAAGTGTGAAGTTACAGCTATTCTTGTTCTGTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCACATGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCAAAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAGGTCATGTCATGTGCTAGAACCATGTCATCAACATCAGCAGCAGCTTCTTCCTCCTCCTACTCTAGTTCATCAAAGAAAGGTGTGAAATCTCATGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCAGCCAATGAGGCTGTGAATAAATATGGTTTGCGTTGCACTCTGGAGCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1530 0.4203 MAPPSDINHLSHPCIYGDFVSSYTERKSGFMKWFGKIFNIGSSRGRGGGRHLQQPVEENMVWPAPAKSLDDCARSRKEEEDLDHAIALSLGENFKRPTGYRWRTGTDEDYAKALQDRMFSSAHPPYAPVPFYTRGYGMQSHNRTCGGCNQEILYGNCLGVGHNYFHPDCFRCHSCRYPITEREFSLSGKHPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRDERYYRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPKIGGHRLIGMRSQAQRLPRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEVEEGICQVLSYMWLDAEVMSCARTMSSTSAAASSSSYSSSSKKGVKSHVENKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGHFPL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0298 509 Pfam LIM domain 145 198 IPR001781 -
Gso18g0298 509 CDD LIM_DA1 145 197 - -
Gso18g0298 509 SMART lim_4 144 196 IPR001781 -
Gso18g0298 509 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Gso18g0298 509 PANTHER PROTEIN DA1-RELATED 2 20 509 IPR045218 -
Gso18g0298 509 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Gso18g0298 509 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 509 - -
Gso18g0298 509 Pfam Protein DA1 294 504 IPR022087 -
Gso18g0298 509 Gene3D Cysteine Rich Protein 139 202 - -
Gso18g0298 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0298 Gso-Chr18 2691419 2696582 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso18g0298 DA1-like 5.8e-97 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0298 18 2691419 2696582 Gso18g0298 18 2691419 2696582 ECH
Gso18g0298 18 2691419 2696582 Gso13g1322 13 28644084 28649275 GST
Gso18g0298 18 2691419 2696582 Gso14g1829 14 50679319 50692809 PCT
Gso18g0298 18 2691419 2696582 Gso2g2143 2 46067020 46072300 PCT
Gso14g1829 14 50679319 50692809 Gso18g0298 18 2691419 2696582 PCT
Gso2g2143 2 46067020 46072300 Gso18g0298 18 2691419 2696582 PCT