Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2178 ATGGAAATTGAAGAGCAAACGATGAAAATGATGATGAAGTCGTCGTCTAGGTTCAGACGTATCTGTGTTTTCTGTGGCACCAGCCCTGGCAAGAACCCCAGCTACCAACTCGCTGCCATCCAACTCGCCAAACAACTTGTGGAGAGGAACATCGACTTGGTTTATGGAGGAGGGAGCATTGGGTTGATGGGTTTAATCTCACAAGTTGTGTTTGATGGTGGACGCCACGTGTTAGGGGTGATTCCAACAACTCTTATGCCAAGAGAGATAACGGGGGAAAGTGTCGGAGAAGTGAGAGCAGTGTCAGGCATGCACCAACGCAAGGCAGAAATGGCGAGACAAGCCGATGCATTTATTGCGCTGCCAGGTGGATATGGCACCCTGGAAGAACTACTTGAAGTGATCACCTGGGCTCAACTAGGAATCCACGATAAACCCCAGGTGGGGTTGTTGAACGTGGATGGGTACTACAACTCGTTGCTGTCATTCATGGACAATGCTGTAGACGAAGGTTTCATTACACCCGCTGCCCGTCACATTATTGTCTCTGCCCAAACTGCCCAAGATCTCATGTGCAAGCTTGAGGAATATGTCCCGAAGCACTGTGGCGTGGCACCAAAGCAAAGTTGGGAGATGAACCAACAGTTATAA 651 0.4931 MEIEEQTMKMMMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGVIPTTLMPREITGESVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPQVGLLNVDGYYNSLLSFMDNAVDEGFITPAARHIIVSAQTAQDLMCKLEEYVPKHCGVAPKQSWEMNQQL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2178 216 Gene3D - 7 196 - -
Gso17g2178 216 SUPERFAMILY MCP/YpsA-like 17 197 - -
Gso17g2178 216 PANTHER LOG FAMILY PROTEIN YJL055W 11 214 - -
Gso17g2178 216 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 11 214 - -
Gso17g2178 216 TIGRFAM TIGR00730: TIGR00730 family protein 20 197 IPR005269 GO:0009691|GO:0016787
Gso17g2178 216 Pfam Possible lysine decarboxylase 63 193 IPR031100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2178 Gso-Chr17 41490242 41494797 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1840 14 50845000 50849212 Gso17g2178 17 41490242 41494797 GST
Gso17g2178 17 41490242 41494797 Gso4g0222 4 1995604 1998540 PCT
Gso17g2178 17 41490242 41494797 Gso6g0201 6 1889169 1891980 PCT
Gso4g0222 4 1995604 1998540 Gso17g2178 17 41490242 41494797 PCT
Gso6g0201 6 1889169 1891980 Gso17g2178 17 41490242 41494797 PCT