Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2172 ATGGCGGTTGAAAATCCCGAGGATGGATTGAAGAAGCTGGAATACTTGTCGCTGGTGTCGAAGGTGTGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAGGTTCTTGCGGAGTTCATCACTGAGTTGGGTCGATCATCGGAGAATGTTGAGGAATTCGACGAGAAATTGAAGGAGAATGGCGCGGAGATGCCGGATTACTTTGTGCGAACGCTCCTCACCATCATCCACGCCATTCTCCCTCCGAAGCCGATGGATTCGAAGAAGGAGAAAGACAGTGTCAACGGCAAGACCACCAAGTTCAAGGCTCTGGCCATCGCGGACGACAGGGACCGGGCCAAGGAGCTTCAGAAGGAGTTAGAATCCGAGGCCAGAGAAAAGCAGAAGCCAGAAATTGAGGAAGATGATGATGGGTACCGAGACAGGGATAGAAGAGATAGGCGCAGAGATAGGTATGAAGATGATAGAAGGGATTATGGCAGAAGAGGCAGAGATAGAGATGATGAAGATGATAGAAGGGATTATGGCAGAAGAGGAAGAGATAGAGATGATGAAGATGATAGAAGGGATTACGGCAGAAGAGGAAGAGATAAATATGACAGGGATAGAGATAGATATGAGAGGCGCAGGAGAGATGAACATGAAGAAGAGCATGGGCGTGGAAGGGAGAATGGGGATAGAGATGGTAATAGGAAGGGTTTACAGCACGGTTCTGGTGAACTTGAATTATATGCAGTTTATAAAGGGAGAATCTCCAGAGTAATGGAGACTGGGTGCTTTGTACAGTTGGATGACTTCAGAGGGAAGGAGGGGTTGGTCCATGTCTCACAGATGGCCACCCGGAGGATTACCAATGCCAAAGATGTTGTCAAGCGTGATCAAGAAGTGTATGTAAAAGTGATCTCAGTTTCAGGCCAGAAGTTGTCTCTTTCCATGAGAGACGTTGATCAACATACCGGTAAAGATCTCCTTCCACTGAAGAAGAGCTCTGAGGATGATGCGTTGAGGATGAATCCGCAGGATTCAAAAGATGGGCCTGTTGCCAGGACGGGTCTTTCAGGTATCAGGATCGTGGAAGAAGGTGATGTTGGTTCTTCGCGGAGACCTCTGAAAAGAATGAGCTCTCCTGAGAGATGGGAAGCAAAACAGTTGATTGCTTCGGGTGTCTTGAGTGTTTCAGAGTATCCAACTTACGATGATGAGGGGGATGGATTGCTGTACCAAGAGGAAGGCGCAGAGGAGGAGCTTGAGATTGAGTTGAATGAAGATGAGCCTGCATTCTTGCAAGGGCAGAGCAGATACTCGATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTGGGTCGAGCTGCTGCACTCCAGTCTGCACTTATAAAGGAGCGTAGGGAAGTGCGAGAACAACAACAACGCACAATGCTTGATTCAATTCCAAAGGATCTCAATCGACCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGTTTATCAGCCTATGATATGCCGGAATGGAAGAAGGATGCCTATGGGAAAACCATTACCTTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAGGAATTGATTCAGGCTGTGCATGATAATCAGGTCTTGGTGGTTATTGGAGAAACTGGTTCAGGTAAGACTACTCAAGTCACACAGTATCTTGCTGAAGCGGGCTACACCACAAGAGGCAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTCGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACCGTTATCAAGTACATGACGGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCATGAAAGAACAATACATACTGATGTTCTTTTTGGACTGCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTAAGATTGATTGTCACATCTGCTACTCTGGATGCCGAGAAATTTTCAGGATATTTCTTTAACTGCAACATCTTTACTATTCCTGGTAGAACTTTTCCTGTGGAAATACTATACACTAAACAGCCTGAAAGTGATTATTTAGATGCAGCTTTAATCACTGTCCTACAGATCCACTTGACAGAGCCTGAGGGAGACATTCTTCTCTTTTTGACTGGTCAAGAAGAGATTGATTTTGCTTGCCAATCTCTCTATGAGAGAATGAAAGGATTAGGTAAGAATGTTCCAGAGCTAATCATTTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTGGTAGTGGCTACTAACATTGCTGAGGCTTCTTTAACTATTGATGGGATATTTTATGTGATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCGAAGCAAGGACTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGGAAGTGTTATCGCCTCTACACTGAGAGTGCTTATAGGAATGAGATGTCTCCTACTACAATTCCTGAGATTCAAAGGATAAATCTGGGGATGACTACGCTTAATATGAAAGCTATGGGGATAAATGATCTGCTGTCTTTTGATTTTATGGATCCACCATCACCCCAAGCCTTGATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACTAAATTAGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCTAAGATGTTGCTTGCCAGCGTGGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACCGGAAATATTTTTTACAGGCCAAGGGAAAAGCAAGCCCAAGCCGATCAGAAGAGGGCAAAGTTTTTTCAGCCAGAGGGTGACCATCTTACCCTACTTGCAGTTTATGAGGCCTGGAAAGCCAAGAATTTTTCTGGACCCTGGTGTTTTGAAAACTTCGTTCAATCCCGATCATTGAGAAGAGCACAGGATGTCAGGAAACAACTTCTCACCATTATGGATAAGTACAAATTGGATGTTGTAAGTGCGGGAAAAAACTTCACCAAAGTCAGGAAGGCTATCACTGCAGGGTTCTTTTTCCATGCTTCTAGAAAGGACCCCCAGGAAGGTTACAGAACCCTTGTTGAGAACCAGCCTGTGTATATCCATCCAAGTTCAGCTCTGTTCCAGAGACAACCAGACTGGGTCATCTACCATGAGCTTGTGATGACAACTAAGGAATATATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATACTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGAATTGAACCACTTTATGACAGATACCATGAGCCAAATTCATGGCGTTTGAGTAAACGTCGTGCATAA 3594 0.4516 MAVENPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDEKLKENGAEMPDYFVRTLLTIIHAILPPKPMDSKKEKDSVNGKTTKFKALAIADDRDRAKELQKELESEAREKQKPEIEEDDDGYRDRDRRDRRRDRYEDDRRDYGRRGRDRDDEDDRRDYGRRGRDRDDEDDRRDYGRRGRDKYDRDRDRYERRRRDEHEEEHGRGRENGDRDGNRKGLQHGSGELELYAVYKGRISRVMETGCFVQLDDFRGKEGLVHVSQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQDSKDGPVARTGLSGIRIVEEGDVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2172 1197 Gene3D - 919 1018 - -
Gso17g2172 1197 Coils Coil 455 475 - -
Gso17g2172 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 554 717 IPR014001 -
Gso17g2172 1197 SUPERFAMILY Nucleic acid-binding proteins 244 321 IPR012340 -
Gso17g2172 1197 SMART ultradead3 542 726 IPR014001 -
Gso17g2172 1197 PANTHER ATP-DEPENDENT RNA HELICASE 84 1197 - -
Gso17g2172 1197 Coils Coil 107 134 - -
Gso17g2172 1197 MobiDBLite consensus disorder prediction 322 352 - -
Gso17g2172 1197 SMART ha2_5 935 1025 IPR007502 GO:0004386
Gso17g2172 1197 Gene3D - 240 325 IPR012340 -
Gso17g2172 1197 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 659 668 IPR002464 -
Gso17g2172 1197 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1082 1158 IPR011709 -
Gso17g2172 1197 Pfam DEAD/DEAH box helicase 550 700 IPR011545 GO:0003676|GO:0005524
Gso17g2172 1197 Gene3D - 720 894 IPR027417 -
Gso17g2172 1197 CDD SF2_C_RHA 721 882 - -
Gso17g2172 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 915 IPR001650 -
Gso17g2172 1197 PANTHER - 84 1197 - -
Gso17g2172 1197 SMART helicmild6 770 874 IPR001650 -
Gso17g2172 1197 Pfam Helicase conserved C-terminal domain 742 874 IPR001650 -
Gso17g2172 1197 Pfam S1 RNA binding domain 246 312 IPR003029 GO:0003676
Gso17g2172 1197 ProSiteProfiles S1 domain profile. 245 314 IPR003029 GO:0003676
Gso17g2172 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 1068 IPR027417 -
Gso17g2172 1197 MobiDBLite consensus disorder prediction 117 236 - -
Gso17g2172 1197 Gene3D - 516 719 IPR027417 -
Gso17g2172 1197 MobiDBLite consensus disorder prediction 322 340 - -
Gso17g2172 1197 Pfam Helicase associated domain (HA2) 936 1024 IPR007502 GO:0004386
Gso17g2172 1197 CDD DEXHc_DHX8 539 717 IPR044762 GO:0000398|GO:0003724|GO:0005524
Gso17g2172 1197 SMART S1_6 243 314 IPR022967 -
Gso17g2172 1197 Coils Coil 197 217 - -
Gso17g2172 1197 CDD S1_DHX8_helicase 245 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2172 Gso-Chr17 41374144 41381907 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1834 14 50742733 50750766 Gso17g2172 17 41374144 41381907 GST