Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2159 ATGGCTCGTCACTCCTTGCTCTTAGCCCTCCTCCTCTTCGCCGCCGTGGCCACCGCCGCGATGGCGGTGGCCGCGTCCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGATGTTGGCGAAGCCGAAGAGGAGGACAACCTGCTGAACGCCGAGCACCACTTCGCGAGCTTCAAGGCCAAGTTCGCCAAGACCTACGCCACCAAGGAGGAGCACGATCATCGCTTCGGCGTCTTCAAGTCCAACCTCCGCAGAGCCAGGCTGCACGCCAAGCTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTAACTCCGGCCGAGTTCCGCCGCCAGTTCCTCGGCCTCAAGCCGCTCCGCTTCCCGGCGCACGCCCAGAAGGCGCCCATCCTCCCCACCAAGGATCTCCCCAAGGATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGGGCGTGTGGTTCGTGTTGGTCTTTCAGTACGACGGGAGCGTTGGAAGGAGCTCATTATCTGGCCACTGGTGAGCTCGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTCAGTCTGGGGGAGTACAGAAAGAAAAGGACTATCCATACACCGGGAGAGATGGCACCTGCAAATTTGACAAAACCAAAGTTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAACCTAGTAAAGAATGGCCCTCTTGCAGTTGCTATCAATGCAGTTTTTATGCAGACATATGTTGGTGGCGTCTCATGCCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTCTAGTTGGTTATGGTGAAGGTGCATATGCTCCCATTCGTTTTAAGAACAAACCTTACTGGATCATTAAGAATTCATGGGGCGAGAGCTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGTCGAAATGTGTGTGGAGTAGATTCCATGGTCTCAACTGTAGCTGCTATATATCCATCCAGCCATTAA 1113 0.5355 MARHSLLLALLLFAAVATAAMAVAASDADDILIRQVVPDVGEAEEEDNLLNAEHHFASFKAKFAKTYATKEEHDHRFGVFKSNLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRFPAHAQKAPILPTKDLPKDFDWRDKGAVTNVKDQGACGSCWSFSTTGALEGAHYLATGELVSLSEQQLVDCDHVCDPEEYGACDSGCNGGLMNNAFEYILQSGGVQKEKDYPYTGRDGTCKFDKTKVAATVSNYSVVSLDEEQIAANLVKNGPLAVAINAVFMQTYVGGVSCPYICGKHLDHGVLLVGYGEGAYAPIRFKNKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAIYPSSH* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2159 370 SMART Inhibitor_I29_2 56 112 IPR013201 -
Gso17g2159 370 SUPERFAMILY Cysteine proteinases 53 362 IPR038765 -
Gso17g2159 370 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 364 - -
Gso17g2159 370 Pfam Papain family cysteine protease 139 361 IPR000668 GO:0006508|GO:0008234
Gso17g2159 370 CDD Peptidase_C1A 140 362 IPR039417 -
Gso17g2159 370 SMART pept_c1 139 363 IPR000668 GO:0006508|GO:0008234
Gso17g2159 370 Gene3D Cysteine proteinases 28 363 - -
Gso17g2159 370 PANTHER CYSTEINE PROTEASE RD19C-RELATED 30 364 - -
Gso17g2159 370 Pfam Cathepsin propeptide inhibitor domain (I29) 56 112 IPR013201 -
Gso17g2159 370 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Gso17g2159 370 PRINTS Papain cysteine protease (C1) family signature 305 315 IPR000668 GO:0006508|GO:0008234
Gso17g2159 370 PRINTS Papain cysteine protease (C1) family signature 327 333 IPR000668 GO:0006508|GO:0008234
Gso17g2159 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Gso17g2159 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 303 313 IPR025660 -
Gso17g2159 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 327 346 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2159 Gso-Chr17 41232155 41235229 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1824 14 50606587 50609386 Gso17g2159 17 41232155 41235229 GST
Gso17g2159 17 41232155 41235229 Gso4g0244 4 2241730 2243481 PCT
Gso17g2159 17 41232155 41235229 Gso6g0223 6 2156074 2158065 PCT
Gso4g0244 4 2241730 2243481 Gso17g2159 17 41232155 41235229 PCT
Gso6g0223 6 2156074 2158065 Gso17g2159 17 41232155 41235229 PCT