Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2152 ATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGTAGTAAGGCCTCCTTGATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAACGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCAGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATTTTCTTAAAAGTCAATGA 690 0.4058 MDVDPCQYEQIAINEKDVNNIILSYLIHNCYKESSESFISCTGMKQPADHLENMEKRKSSKASLMDKFHSSLGIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILAHFNLPIHTAMERLIQQTSVVRQCLSQEDGGPPPFSLKDFLKSQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2152 229 Pfam CTLH/CRA C-terminal to LisH motif domain 74 207 IPR024964 -
Gso17g2152 229 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 12 227 - -
Gso17g2152 229 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gso17g2152 229 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 67 124 IPR006595 -
Gso17g2152 229 PANTHER RAN BINDING PROTEIN 9-RELATED 12 227 - -
Gso17g2152 229 SMART toby_final6 120 216 IPR013144 -
Gso17g2152 229 SMART ctlh 67 124 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2152 Gso-Chr17 41181003 41183893 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0603 14 5899321 5902723 Gso17g2152 17 41181003 41183893 GST
Gso17g2152 17 41181003 41183893 Gso4g0248 4 2298195 2301457 PCT
Gso17g2152 17 41181003 41183893 Gso6g0229 6 2209405 2212655 PCT
Gso4g0248 4 2298195 2301457 Gso17g2152 17 41181003 41183893 PCT
Gso6g0229 6 2209405 2212655 Gso17g2152 17 41181003 41183893 PCT