Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2149 ATGTATCCGAACCAAGCCTTTTCTTCAGGGTCCTATGCTGATATGTTGTCTGGGAATCCTCTTTTACCTCATAACTACGGTGAAACTGTAGGAGGACAAAATGAATTGAAGTTCATCACATCCATGAGGGACACGATGATTATGCAACCTATTGATGGGCATCCCAATGCCGCCGCCACCACAGGCAATCCGGATTCTTTTGAGAATGCCGGAGATTCCCATTCCCATGTTATTCCAAGGACAACACAATTGGGACTTGTGGACAATGAGCAAAATGTACAAAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCTGTTCCTACCTTTCCATATCAGTATCCTGGCACCAGTTTCTCTTCCCTAATGTCTGCTTGTGTCCCAAATTTAAAGGGAACTTCATCTCTTAAAGATGATGAGGCCAGCTTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTCTGGTGGCTTTCACAAAAGGGATGGTTTGTATAATCCACAACACCCCTCAATGTGCCTTGGTGAAGGCCAAAGTCATGGATCACAAGGTTTTTCCAACAATATGTTGAACTCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTCCGAAAGCAAACCAGTTTGGAAAAGCAACCGAGTTTCCGTGATGTTGGTTTAGATGGCTCCAAAGATTCCGATGGAAAATCTACCACCCAATCTGTGCAGATATCTTCAGGCCCCAATGGTTCTTCTGCTGCAAACTCTTCATGTGAGCTATCACCTACAGAACGACAGAATTTTTTGGACAAAAAGACAAAGCTTTTGTCTATGCTGGATGAGGTGGATAAAAGATACAGACAGTACTGCCACCAAATGCAGATTGTTGTGTCATCTTTTGATATGGTTTCTGGATGTGGAGCAGCTGAACCATACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTGCATGATGCCATTAGCGGCCAAATTCAAGTGACTCAAAGGAACCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTCCGTGCATGGCTCTTTGAGCACTTCCTTCATCCTTATCCTAAGGATTCAGAGAAAATTATGCTAGCAAGGCAAACTGGCTTAACAAAAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAATTTGATGTTCAAGCTTCTGACAATAAAAGGGAAGAGTCACAGGACAACTTAATAACAGTTGATGATAGTGTTCAGCATCATGGGCTGAAGTTGGATCATGCCGACAGAGGAATCCAAAGCAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGAAAATTGCAAGGTGATCAAAGGTTCAACATGAACAACAACAATAGTCCTTATTATGGTGATGGCTGCATAATGGCTTCTACTCCGGCCACATATGATTTATCAGAGTTAGGTAACATTGCCGTTGGTGGCCACGTGTCTCTCGCATTGGAATTGAGGAACTGTGAAAGCGAAGGATTTGGTGTGTCGAATGATGACATGCATAAACGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATTTGCTAGATTACCATTTCACAGACACAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1836 0.4379 MYPNQAFSSGSYADMLSGNPLLPHNYGETVGGQNELKFITSMRDTMIMQPIDGHPNAAATTGNPDSFENAGDSHSHVIPRTTQLGLVDNEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGTSFSSLMSACVPNLKGTSSLKDDEASLQRELRNAECMASLASSGGFHKRDGLYNPQHPSMCLGEGQSHGSQGFSNNMLNSQYLKAAQELLDEIVNVRKQTSLEKQPSFRDVGLDGSKDSDGKSTTQSVQISSGPNGSSAANSSCELSPTERQNFLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVSGCGAAEPYTALALRTISRHFRCLHDAISGQIQVTQRNLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTKNQVANWFINARVRLWKPMVEEMYKEEFDVQASDNKREESQDNLITVDDSVQHHGLKLDHADRGIQSSDHGENAMDPRIGKLQGDQRFNMNNNNSPYYGDGCIMASTPATYDLSELGNIAVGGHVSLALELRNCESEGFGVSNDDMHKRRKKTLASSPEADLLDYHFTDTGKQQNKFGNPHLLHEFVV* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2149 611 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 30 574 - -
Gso17g2149 611 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 574 - -
Gso17g2149 611 CDD homeodomain 381 442 IPR001356 GO:0003677
Gso17g2149 611 Gene3D - 378 455 - -
Gso17g2149 611 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Gso17g2149 611 MobiDBLite consensus disorder prediction 226 269 - -
Gso17g2149 611 Pfam Associated with HOX 199 339 IPR006563 -
Gso17g2149 611 SMART HOX_1 381 445 IPR001356 GO:0003677
Gso17g2149 611 Coils Coil 200 220 - -
Gso17g2149 611 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Gso17g2149 611 SMART prehox3 192 340 IPR006563 -
Gso17g2149 611 SUPERFAMILY Homeodomain-like 382 448 IPR009057 -
Gso17g2149 611 MobiDBLite consensus disorder prediction 239 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2149 Gso-Chr17 41142207 41146638 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso17g2149 POX 1.5e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g2149 17 41142207 41146638 Gso4g0255 4 2349822 2353702 PCT
Gso17g2149 17 41142207 41146638 Gso6g0234 6 2272219 2276663 PCT
Gso4g0256 4 2355848 2358585 Gso17g2149 17 41142207 41146638 PCT
Gso6g0235 6 2278693 2281251 Gso17g2149 17 41142207 41146638 PCT