Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2134 ATGGATGCAACTTTTGCAACCCTGAATGCCAGTGCTAATCTAGTCACTAAGGGAATTGGATCTAGAAACAGAACTTCTTCTGGGTTCTGGGGTGAGAACACAAGGGGAAGTTTTAACATGAGATTTTGTAGTGTTCAATCACGCAAGAGTTTAAAAGCTACTACTTTCAAGCCTGGCTTTGCACAAGCTGTTTATTCACCAGACGTGAACAAAGAGCCACTGGTATTCCATGGACCCATTTTTCAGAATCCAAAAGCAAACCCAGAAAATGTAGCTGCTATCATATTGGGTGGAGGGGCTGGAACTCGACTCTTTCCTCTTACTAGCACAAGAGCTAAGCAAGCGGTTCCAATTGCAGGGTGTTACAGACTCATAGATATTCCTATGAGCAATTGCATCAACAGTGGCATCAGAAAAGTGTACGTTTTAACACAGTTCAACTCTTTCTCCCTCAATGGCCACTTGTCTCGCACTTACAATTTTGGAAATGGCGTGAACTTTGGAGGTGGTTTTGTGGAGGTCTTGGCTGCTACTAAAACTCCTGGAGAATCTGGGAACAAATGGTTCCAAGGGACAGCTGATGCAGTGAGACGATTTATCTGGGTTTTTGAGGATGCCAAGAACAAGGATATTGAGAACATATTGATAATTTCTGGTGATCATCTTTGCCGGATGGACTATATGAAGCTTCTGGAGAAACATATTGGGACAAATGCTGATATCACAGTTTCATGTGTGCCTATGGATGAAAGCCGTGCATCAGACTACGAGCTAATGAAAATTGATAGAAAGGGACAGATTACCCAGTTTGTAGAAAAACCAGAAGGATCAGATTTGCAGGCAATGCATGTTGATACCACTCTCCTAGGCTTAACTGCAGAAGAAGCACAGACATATCCTTACATTGCACCCATGGGTGTTTCTGTATTCAGAACTGAGACCCTGCTGAAACTGTTAAGATGGAGCTGTCCTTCTTGCAATGACTTTGGATCTGAAATTATCCCATCTGCTTTGAGGGACCACAAAGTCCAAGCATATATGTTCAGGGACTACTGGAAAGATATTGGAACTATCAAGTCCTTCTTTGAAGCCAATCTGGAACTAACAAAACAGTCTCCAAATTTTGAATTCTATGATCAAGAGACGCCTTTCTTCACTTCTCCAAGATTCCTACCACCCACTAAAGCAATAAAGTGCAAGATCATGGATGCAATTATTTCTCATGGTTGCTTCTTGAGTGAGAGTAGAGTTCAACATTCTATTGTTGGTGTGCGCTCACGTTTAGAGTCCGGTTCAGAGCTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGATTCTGAAATTGCAACTCTTCTGGAAGAAGGAAAGGTTCCAATAGGTGTTGGAGAGAATACTAGAATCAGGAATTGTATTATCGACAAGAATGCCAGGATAGGAAGAAATGTGATTATAGCCAATACTGATGGGGTTCAAGAAGCAGACAGGCCTGCGGAAGGATTCTACATTAGGTCCGGCATCGTAGTTGTAGTGAAGAATGCAACAATTGAAGATGGAACAGTCATTTGA 1575 0.421 MDATFATLNASANLVTKGIGSRNRTSSGFWGENTRGSFNMRFCSVQSRKSLKATTFKPGFAQAVYSPDVNKEPLVFHGPIFQNPKANPENVAAIILGGGAGTRLFPLTSTRAKQAVPIAGCYRLIDIPMSNCINSGIRKVYVLTQFNSFSLNGHLSRTYNFGNGVNFGGGFVEVLAATKTPGESGNKWFQGTADAVRRFIWVFEDAKNKDIENILIISGDHLCRMDYMKLLEKHIGTNADITVSCVPMDESRASDYELMKIDRKGQITQFVEKPEGSDLQAMHVDTTLLGLTAEEAQTYPYIAPMGVSVFRTETLLKLLRWSCPSCNDFGSEIIPSALRDHKVQAYMFRDYWKDIGTIKSFFEANLELTKQSPNFEFYDQETPFFTSPRFLPPTKAIKCKIMDAIISHGCFLSESRVQHSIVGVRSRLESGSELQDTMMMGADYYQTDSEIATLLEEGKVPIGVGENTRIRNCIIDKNARIGRNVIIANTDGVQEADRPAEGFYIRSGIVVVVKNATIEDGTVI* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2134 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 524 - -
Gso17g2134 524 CDD LbH_G1P_AT_C 392 518 - -
Gso17g2134 524 SUPERFAMILY Nucleotide-diphospho-sugar transferases 90 485 IPR029044 -
Gso17g2134 524 Gene3D Hexapeptide repeat proteins 390 524 - -
Gso17g2134 524 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 91 488 IPR011831 GO:0005978|GO:0008878
Gso17g2134 524 Pfam Nucleotidyl transferase 93 370 IPR005835 GO:0009058|GO:0016779
Gso17g2134 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 524 IPR011831 GO:0005978|GO:0008878
Gso17g2134 524 SUPERFAMILY Trimeric LpxA-like enzymes 387 524 IPR011004 -
Gso17g2134 524 CDD ADP_Glucose_PP 93 355 - -
Gso17g2134 524 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 188 196 IPR005836 GO:0005978|GO:0008878
Gso17g2134 524 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 81 389 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2134 Gso-Chr17 41028947 41033217 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0619 14 6083866 6088554 Gso17g2134 17 41028947 41033217 GST
Gso17g2134 17 41028947 41033217 Gso4g0267 4 2449542 2454475 PCT
Gso17g2134 17 41028947 41033217 Gso6g0246 6 2382492 2386960 PCT
Gso4g0267 4 2449542 2454475 Gso17g2134 17 41028947 41033217 PCT
Gso6g0246 6 2382492 2386960 Gso17g2134 17 41028947 41033217 PCT