LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g2127	ATGCTTTGCTTGATGCTTGGAAAAACAAAAACAAAAAGTACTACACCTATCATAATGCCATTCAGGAGCATTGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATTAGCAACATGTATAGAAGAGGTGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCACCACCACCATCATCATCTTCTTCTTCTTCTTCATCTTCATCATGGCAGAGCCGGTGGGCTAATTTGCCACCCGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCTTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAAGTTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTTATCACTTTCCCCATATCACTAAAGCAGCCTGGTCCAAGAGACTCTCCAATCCAGTGTTTTATTAGGAGAGAAAGAATGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTTTACTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTATAATATCATTGGTTTCCGATGATTTCTCTTGGGCTAGCAACACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTCACAATCTTGGATGGCGAGCCCGCGCATGAAACTTCACTTCCACTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCTAACAAGGTTGCTGCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTAATCCCCATATTTGCAATCCAAGAAGGAGGGAACGCCCCTACTCCTTTGAAGTTTACCACCAATTATCTTAATGATCATGCGTCTACCACCACCGAGCATGCATCTACCACCACACCAGACTCAAAAGGAAAGAAACCAGAAGTTGTTGAGTTTGACTCAACTGGCACTGCCAATACTCCAGAATCAATCCAGCGGGCAAGGGAACCATTGGTTTTGAAAAACAAAGCTCCTAGATGGCACGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA	1365	0.4425	MLCLMLGKTKTKSTTPIIMPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPPPPSSSSSSSSSSSWQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCKLWREITKDVVKTPEQCGFITFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVSDDFSWASNTYVGKLRSNFLGTKFTILDGEPAHETSLPLNCKLQQRVHLKQVLPNKVAAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPIFAIQEGGNAPTPLKFTTNYLNDHASTTTEHASTTTPDSKGKKPEVVEFDSTGTANTPESIQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*	455

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g2127	454	Pfam	Tub family	143	449	IPR000007	-
	Gso17g2127	454	Pfam	F-box domain	82	129	IPR001810	GO:0005515
	Gso17g2127	454	MobiDBLite	consensus disorder prediction	322	353	-	-
	Gso17g2127	454	ProSitePatterns	Tub family signature 2.	439	454	IPR018066	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	198	214	IPR000007	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	214	238	IPR000007	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	265	292	IPR000007	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	364	381	IPR000007	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	382	398	IPR000007	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	411	430	IPR000007	-
	Gso17g2127	454	PRINTS	Tubby superfamily signature	432	454	IPR000007	-
	Gso17g2127	454	SUPERFAMILY	F-box domain	80	126	IPR036047	GO:0005515
	Gso17g2127	454	PANTHER	TUBBY-RELATED	19	454	-	-
	Gso17g2127	454	SUPERFAMILY	Tubby C-terminal domain-like	131	454	IPR025659	-
	Gso17g2127	454	PANTHER	TUBBY-LIKE F-BOX PROTEIN	19	454	-	-
	Gso17g2127	454	Gene3D	-	73	128	-	-
	Gso17g2127	454	ProSitePatterns	Tub family signature 1.	382	395	IPR018066	-
	Gso17g2127	454	MobiDBLite	consensus disorder prediction	44	79	-	-
	Gso17g2127	454	Gene3D	Tubby Protein; Chain A	141	454	IPR025659	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g2127	Gso-Chr17	40966720	40970643	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Gso17g2127		Tub	1.7e-101	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g0626	14	6156148	6159909	Gso17g2127	17	40966720	40970643	GST