Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2120 ATGGGAATGGAAGGAATTGCAGTGAGTGTGGTTACAATGTTGTTGTTGATGGTTGGGTTAACAATGGGGATGAGTTCGAGAACGGAATGGTTTGCGTTAAGGGAGCTTCGACAATCGTTGGAGATTAGGGCAAAGTATTGGCCAATAAAAACCGAACCGTGCGGGAACTGGACCGGGGTTCAGTGCCGGAACGGTCGAGTTGTGGGCATAAACGTGTCAGGTTTGAGGAGAACAAGGTGGGGAAGGCTTAACCCAAGTTTTGAAGTGGGTTCTCTTGTGAATTTCACACTGTTAGAAACGTTTAATGCTTCTGGGTTTAAGCTTAATGGGTCTATTCCTCAGTGGTTGGGTGAGAGCCTTGGTGTGTTGGAGGTGCTTGACCTTAGCTTTTGTTCTATAAAGGGTTCGATTCCTGATTCAATTGGGTGGTTGAGTAAGTTGAAGGTTTTGTTGCTTTCAGGGAATTTTCTCACTGGCAGAATGCCTTCAACCTTTGGGAACCTCACAAGGCTTTCTGTTCTTAATCTCTCTGGTAACTCTCTTTCAGGGACTGTGCCTGATTCTGTGTCTAAACTTGGGAACCTCTCAAGGCTTGATCTTTCTTATAATTTCTTGTCTGGGTCTGTTCCACCTGAATTGGGTGCCCTTTCAAGTCTTCAATTTTTTAACCTTTCTGGGAATTCTTTTACTGGGACTTTTCCCTCTCAACTGGGTAACCTTTCCAAGTTGGTTGATGTTGATCTTAGTATGAATTTTCTGTCGGGGTCGTTGCCAGGTGGTTCATCTTCTTCTGGCCTTTTGGCACTCAAGGTTCTCATTCTCAGAGGGAATTTGTTTGATGGTGTTCTTCCGGCTGATTTGTGGCCAATGCCCAGATTGCACTTTCTTGATGTGTCCAGTAACAACCTCACTGGGACGCTGCCGAATTTCACGAGTTGGAATGTTAGCTCTGTTGGTTTTGTGTTCAATCTGTCAAACAATTTGTTCTATGGACTTTTGAATACTTCACTGGACAGGTTTGAAATTATTGATTTATCAAGTAATTATTTGGAAGGTGAGGTGCCAGGTGGTGGTGTTAATAATGTTAGTCTAGATAGAAATTGCCTACAGAGGATTCCAAACCAGAGGGATTTGGAAGACTGTAGAGTGTTTTATGATAATAGAAGTTTACCCTTTGGATTCCTCAAGTCCGGAAGCCGTAGTCGGGTGATATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGTGCTGCTGGCATTGGTCCTCATGCTTGTTCTAAAACAATGTCACAATCGTAGAAGCTTGGGAGTTCAAAGGGGGACCAAAGATGGGGGGCCTGTTCAAGAAGGGGAAAGTCCTATACCTCCTAAGGATACCGTCTTTGTGACTGTGGGAGATGCATTCAGTTTTGAGCAAATGCTCCATTTGACCAGCAATTTTGCTGAAGCAAATGTCATAAAGCATGGTCATTCTGGGGACCTCTTCTTGGGAGTCTTGGAAGGTGGAGCAACCGTGGTTGTCAAAAAGGTAGATTTGAATTTATTTAAGAGAGAATCGTATGTTGTGGAATTGGGACTATTAAGTAAGGTTCCACATGCAAGATTGGTCCCAATCCTGGGCCACTGCTTGGACAATGAAAATGAGAAATTCATAGTTTACAAGTACATGCCAAATCGAGATTTAGCTACTTCCTTGCACAGAGTCACCGGTTCAGATGGTAAATTACAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCATAGCTTACCTACATGAGTGCAGCCCTCCCCTTGTCCACAGAGATATCCAAGCTAGCAGTATACTACTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTAGTGCCCAAGGAGATCTTCAACAAGGAGTCATCTCAAGGGTTTTCAGCAAGCCACCATCTTCCAATCAAGCAGATTCTGGTAAATCATCAGTGACATGTGCCTATGATATCTACTGTTTTGGCAAGATTTTACTTGAGCTCATTACCGGTAACATTGAAGTCAGCAAGTTAGATGATGCCTCTACAAAGGAGTGGTTAGAGCAAACCTTGCCTTACATCACTATATACGATAAAGAACGGGTGACTAAGATTATTGACCCATCATTGATCGTGGATGAGGACCTGTTGGAAGAGGTATGGGCTATGGCAATTGTGGCCAATGCATGCTTGAATCCCAAGCCTTCCAAACGCCCTCCTATGAGGCATGTCCTGAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGAAAATACTAGCTCAGCAAGGTTGAGATCAAACTCTTCTAGGAAATCTTGGAGCACTGCATTCTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGTTGTTGCCACAAACAAAGAGGGTTCTAGTGACACTAAAAAATCAGGAAAAGTAGGTTCTCAAAGTAGTGGAAACGATCACTCTTCTTCCAATAAAAGATCGTCCAATGAAATTTTCCCTGAACCATTGGAAATACTAGATGTGGAGACAGGAGTGGCAAGATAA 2565 0.4324 MGMEGIAVSVVTMLLLMVGLTMGMSSRTEWFALRELRQSLEIRAKYWPIKTEPCGNWTGVQCRNGRVVGINVSGLRRTRWGRLNPSFEVGSLVNFTLLETFNASGFKLNGSIPQWLGESLGVLEVLDLSFCSIKGSIPDSIGWLSKLKVLLLSGNFLTGRMPSTFGNLTRLSVLNLSGNSLSGTVPDSVSKLGNLSRLDLSYNFLSGSVPPELGALSSLQFFNLSGNSFTGTFPSQLGNLSKLVDVDLSMNFLSGSLPGGSSSSGLLALKVLILRGNLFDGVLPADLWPMPRLHFLDVSSNNLTGTLPNFTSWNVSSVGFVFNLSNNLFYGLLNTSLDRFEIIDLSSNYLEGEVPGGGVNNVSLDRNCLQRIPNQRDLEDCRVFYDNRSLPFGFLKSGSRSRVIFILVGIFGGLGFIVLLALVLMLVLKQCHNRRSLGVQRGTKDGGPVQEGESPIPPKDTVFVTVGDAFSFEQMLHLTSNFAEANVIKHGHSGDLFLGVLEGGATVVVKKVDLNLFKRESYVVELGLLSKVPHARLVPILGHCLDNENEKFIVYKYMPNRDLATSLHRVTGSDGKLQSLDWITRLKIAIGAAEGIAYLHECSPPLVHRDIQASSILLDDKFEVRLGSLSEVSAQGDLQQGVISRVFSKPPSSNQADSGKSSVTCAYDIYCFGKILLELITGNIEVSKLDDASTKEWLEQTLPYITIYDKERVTKIIDPSLIVDEDLLEEVWAMAIVANACLNPKPSKRPPMRHVLKALENPLKIVREENTSSARLRSNSSRKSWSTAFFGSWRHSSSDSVVATNKEGSSDTKKSGKVGSQSSGNDHSSSNKRSSNEIFPEPLEILDVETGVAR* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2120 854 Gene3D Phosphorylase Kinase; domain 1 458 557 - -
Gso17g2120 854 MobiDBLite consensus disorder prediction 439 458 - -
Gso17g2120 854 MobiDBLite consensus disorder prediction 798 837 - -
Gso17g2120 854 Gene3D Ribonuclease Inhibitor 189 390 IPR032675 -
Gso17g2120 854 SMART LRR_typ_2 144 167 IPR003591 -
Gso17g2120 854 SMART LRR_typ_2 240 264 IPR003591 -
Gso17g2120 854 SMART LRR_typ_2 192 216 IPR003591 -
Gso17g2120 854 SMART LRR_typ_2 266 289 IPR003591 -
Gso17g2120 854 SMART LRR_typ_2 290 314 IPR003591 -
Gso17g2120 854 SMART LRR_typ_2 168 191 IPR003591 -
Gso17g2120 854 ProSiteProfiles Protein kinase domain profile. 482 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2120 854 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Gso17g2120 854 SUPERFAMILY Protein kinase-like (PK-like) 464 759 IPR011009 -
Gso17g2120 854 PANTHER OS03G0724300 PROTEIN 7 840 - -
Gso17g2120 854 Gene3D Transferase(Phosphotransferase) domain 1 558 783 - -
Gso17g2120 854 SUPERFAMILY L domain-like 46 310 - -
Gso17g2120 854 Pfam Protein tyrosine and serine/threonine kinase 487 757 IPR001245 GO:0004672|GO:0006468
Gso17g2120 854 ProSiteProfiles cAMP/cGMP binding motif profile. 487 535 IPR000595 -
Gso17g2120 854 PANTHER OS01G0253100 PROTEIN 7 840 IPR045271 GO:0004714|GO:0006468
Gso17g2120 854 MobiDBLite consensus disorder prediction 798 854 - -
Gso17g2120 854 Pfam Leucine rich repeat 146 203 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2120 Gso-Chr17 40908724 40913976 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Gso17g2120 PK_Tyr_Ser-Thr 1.5e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0635 14 6242192 6247570 Gso17g2120 17 40908724 40913976 GST