Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2100 ATGGAGTTCATGGTTCGGTGTTGTAGTTCGTGCGCGCTATCCAGATTTCGTTTTAGCCTTCGATTCGCCGTCGTTGTTTTCGAGATTGTATTGATATTGGCATGGTTGGAAGCCAACAATGCAAAGCTCCAAGAACACCAATTTCAATGGGGAGGTTTGGAAGGGAGGATTGAGAACATTGCCTCACACTCTTGCATACATGACCAGATACTTGAACAGAGAAAGCGACCTGGTCACAAGGTTTATTCAGTTACCCCACAGGTATATGAGCCTGGTCTCTCGAAACCACTCCAGCATAAAGGTAGGACATTACTTGGTGTATCAACATCATTGGAGTTGCAAGGGAATGAAAAACAACCTATTAGGATATATCTAAATTATGATGCTGTTGGCCACTCCCCTGATAGGGATTGCCAAAAAATTGGTGACGTTGTCAAGCTTGGGGAGCCTCCCATGACTTCTCTTCCTGGTTTGCTTTCTTGTAATCCTCTTGCTGATCCTCCAGTCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGACATTTCAGGAGAGGACAAAAAGCATCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGTTTGTTGAGCCTGTCAAGGGTAACTTGAGATTAAGTGGGTACTCTGCATGTGGACAAGATGGAGGTGTGCAGCTTCCTCATGAATATGTTGAAGAGGGAGTCTCTGATGCCGACTTAGTTCTCTTGGTGACTACAAGACCTACAACTGGAAATACACTTGCTTGGGCTGTGGCATGTGAACGGGACCAATGGGGCCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCAGAGACTTTGCTTTCAGCGACTCTGATACATGAGGTTATGCATGTTCTTGGTTTCGATCCTCATGCCTTTGCTCATTTTAGAGATGAAAGAAAAAGACGCCGTAATAAGGTTACCGAACAAGTAATGGATGAAAAGATTGGGCGAATGGTAACACGTGTGGTGCTTCCACGTGTTGTCATGCATTCTCGACATCATTATGCGGCATTTTCTGGAAATTTTACTGGCTTAGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCACTGGGAAAAGAGACTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACACTAGCTCTCTTAGAAGATAGTGGATGGTACAAAGCCAATTATAGCATGGCAGACCGACTTGATTGGGGTCGTAACCAGGGAACTGAGTTTGTTACCTCCCCTTGCAATCTCTGGAAAGGGGCCTATCATTGCAACACAACACAGTTCTCTGGTTGTACGTATAACAGAGAGGCAGAGGGTTACTGCCCAATTCTAACCTACAGCGGAGACCTTCCTCAGTGGGCTCAGTATTTTCCTCAAGCTAATAAAGGAGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGATGGGTCATGTACAGACACTAGCAGTGCAAGGGCGCCTGATAGAATGCTAGGTGAAGTTCGAGGAAGTAACTCTAGGTGTATGGCCTCATCATTAGTGCGCACAGGATTTGTACGAGGTTCTCTGACCCAGGGAAATGGTTGTTATCAGCACAGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTATCTGGAAAGTGTGTCCTCAGGCTGGTGGACCCCTTCAGTTTCCTGGCTTTAATGGTAAATTAATCTGCCCTGCATATCATGAGCTCTGTAACACAAATCCAGTGGTTGTGTCTGGGCAATGTCCCAGTGCATGTAATTCCAATGGAGACTGTGTTGATGGAAGGTGCCACTGCTTGCTTGGGTTTCATGGTCATGATTGCAGTAGACGTTCCTGCCCCAGCAATTGCACCGGCAATGGCATGTGCCTCTCCAGTGGAATTTGTGAATGTAAATCTGGCTATACTGGCATTGACTGTTCTACTGCTGTTTGTGACGAGCAATGCAGCCTTCATGGCGGGGTTTGTGATAATGGAGTTTGCGAATTTCGCTGTTCTGACTATGCGGGATACACTTGCCACAACAGCTCCATGCTCTTCTCCAGTCTTTCAGTTTGCAGAAATGTGCTGGGAAATGATATCTCCGGGCAGCATTGTGCTCCCAGTGAATCTAGCATACTACAGCAGCTAGAAGAAGTGGTTGTCATGCCCAACTACCATAGATTATTTCCTGGTGGTGCTAGGAAACTATTTAATATATTTGGAAGCTCCTACTGTGATGAGGCAGCTAAAAGGCTTGCATGCTGGATCTCAATCCAAAAGTGTGAGAAGGATGGAGACAACAGGCTACGAGTATGTCATTCCGCTTGTCAGGCTTATAACCTAGCATGTGGAGCTTCACTGGACTGTGGTGACCAAACCCTTTTCAGCAGCGAGGGGGGGGATGAGGGTCTGTGCACTGGCTCTGGTGAAATGAAATTGTCATGGTTTAATCGACTGAGAAATAGTTTTTCTTTGAGAAACAGTTTCTCCAAAGGAATATCTGTAAGATATAGGCAGTTTTAG 2586 0.4555 MEFMVRCCSSCALSRFRFSLRFAVVVFEIVLILAWLEANNAKLQEHQFQWGGLEGRIENIASHSCIHDQILEQRKRPGHKVYSVTPQVYEPGLSKPLQHKGRTLLGVSTSLELQGNEKQPIRIYLNYDAVGHSPDRDCQKIGDVVKLGEPPMTSLPGLLSCNPLADPPVFGDCWYNCTSEDISGEDKKHRLRKALGQTADWFRRALFVEPVKGNLRLSGYSACGQDGGVQLPHEYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRNKVTEQVMDEKIGRMVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQWAQYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINNSLEVAVDGIWKVCPQAGGPLQFPGFNGKLICPAYHELCNTNPVVVSGQCPSACNSNGDCVDGRCHCLLGFHGHDCSRRSCPSNCTGNGMCLSSGICECKSGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCHNSSMLFSSLSVCRNVLGNDISGQHCAPSESSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSSYCDEAAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGGDEGLCTGSGEMKLSWFNRLRNSFSLRNSFSKGISVRYRQF* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2100 861 ProSitePatterns EGF-like domain signature 2. 656 667 IPR000742 -
Gso17g2100 861 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 3 833 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gso17g2100 861 ProSitePatterns EGF-like domain signature 1. 656 667 IPR000742 -
Gso17g2100 861 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 114 603 - -
Gso17g2100 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 249 278 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gso17g2100 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 402 431 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gso17g2100 861 Gene3D Leishmanolysin domain 3 443 501 - -
Gso17g2100 861 Gene3D Laminin 608 637 - -
Gso17g2100 861 Gene3D Laminin 639 670 - -
Gso17g2100 861 Pfam Leishmanolysin 175 601 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gso17g2100 861 Gene3D Leishmanolysin domain 4 503 598 - -
Gso17g2100 861 Gene3D - 114 304 - -
Gso17g2100 861 Pfam EGF-like domain 640 667 IPR013111 -
Gso17g2100 861 Gene3D Leishmanolysin , domain 2 314 439 - -
Gso17g2100 861 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 3 833 - -
Gso17g2100 861 SMART egf_5 608 636 IPR000742 -
Gso17g2100 861 SMART egf_5 639 668 IPR000742 -
Gso17g2100 861 ProSiteProfiles EGF-like domain profile. 636 668 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2100 Gso-Chr17 40712498 40720580 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0654 14 6498380 6506684 Gso17g2100 17 40712498 40720580 GST
Gso17g2100 17 40712498 40720580 Gso4g0300 4 2720585 2728361 PCT
Gso17g2100 17 40712498 40720580 Gso6g0284 6 2656607 2665699 PCT
Gso4g0300 4 2720585 2728361 Gso17g2100 17 40712498 40720580 PCT
Gso6g0284 6 2656607 2665699 Gso17g2100 17 40712498 40720580 PCT