Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2088 ATGTTTGGCGAAACCGTTCCGCGACCACAGTTCATGCAATCGGAGCCGAGAATGTCGACGACGGAGGCGCTCACCGACGACGAGTTCACGATGCAAAGCAGTAGCACGGCGTCACCGATGAGCCCTTACTACTACGAGCAGGGAAGGTTAAGCGGCGAAGGCTCGCCAATGACGATGTCACCGTGGAACCAGACAACGAACTCCCCATTCTCCAAACCTCAATGGTCTCAAGAACAAAACAGCGTCCCGCAAAACGCGCTCGTAGGTTCTCTTGTCCGAGAAGAGGGACACATCTATTCGCTTGCTGCTTCCGGCGATCTTCTGTACACCGGTTCCGACAGCAAGAATATTCGTGTCTGGAAGAACCTCGAGGAATATTCCGGGTTCAAATCCAACAGTGGTTTGGTGAAAACCATAATATTGTCTGGTCAGAAGATCTTCACCGGTCACCAAGACGGCAAAATCCGCGTCTGGAAGGTCTCCCCTAAGAACCCTAGCTTACACAAACGTGCCGGCACGTTGCCAACGCTTAAAGACATCTTCAAGAGCTCAATTAAGCCCAGCAACTACGTCGAGGTTCGACGACACAAAACGGCGTTATGGATCAGACACTCCGATGCCGTTTCGTGTTTGAGCCTTTCAGCAGACAAAACGTATTTATACTCCGCATCGTGGGACAGGACAATCAAGGTGTGGAGGATTTCAGACTCCAAATGCTTGGAATCAATCCACGCCCACGACGACGCGGTGAACGCCGTCGTGTGCGGGGACGGGGGCGTGATGTTTTCCGGCTCGGCGGACGGCACCGTCAAGGTGTGGCGGCGGGAGCCGCGAGGGAAAGGCCTGAAGCACGCCCCGGTGAAGACTCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGATGGACGCGGCGGGGGGGTCGATGGTGTACTGCGGCGCCTCCGACGGACTGGTGAACTTTTGGGAAAGCGACAAGAATTACGCGCACGGTGGGGTTTTGAAGGGCCACAAGCTCGCGGTGCTGTGCCTCACCGCAGCGGGGACGTTAGTGTTCAGCGGTTCCGCGGATAAGACCATATGCGTGTGGAAACGCGAGGGTTTGATTCACACGTGCATGTCGGTTCTCACGGGCCACGACGGTCCGGTGAAGTGCCTCGCCGTGGAGGAGGACCGCAAAGCCGCCGCGAAAGGTGACCGGGAACGGCTTTGGAGTTTGTACAGTGGGAGTTTGGATAAGTCGGTGAAGATTTGGAGTGTTTCCGAATCAATGAATAATGATAATAATAATAACAATAGTAATGATCAGGTGAGGCACCACCGCATGGCATCTGATGCGGACTCGTTGCCTTCTGTATCAGATAGTAGTTTCTCTTCGGGCAGGACCAATGGGAGGAACTGA 1401 0.5503 MFGETVPRPQFMQSEPRMSTTEALTDDEFTMQSSSTASPMSPYYYEQGRLSGEGSPMTMSPWNQTTNSPFSKPQWSQEQNSVPQNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLEEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSLHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIRHSDAVSCLSLSADKTYLYSASWDRTIKVWRISDSKCLESIHAHDDAVNAVVCGDGGVMFSGSADGTVKVWRREPRGKGLKHAPVKTLLKQECAVTALAMDAAGGSMVYCGASDGLVNFWESDKNYAHGGVLKGHKLAVLCLTAAGTLVFSGSADKTICVWKREGLIHTCMSVLTGHDGPVKCLAVEEDRKAAAKGDRERLWSLYSGSLDKSVKIWSVSESMNNDNNNNNSNDQVRHHRMASDADSLPSVSDSSFSSGRTNGRN* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2088 466 MobiDBLite consensus disorder prediction 53 82 - -
Gso17g2088 466 Pfam WD domain, G-beta repeat 332 364 IPR001680 GO:0005515
Gso17g2088 466 Pfam WD domain, G-beta repeat 371 419 IPR001680 GO:0005515
Gso17g2088 466 Pfam WD domain, G-beta repeat 204 232 IPR001680 GO:0005515
Gso17g2088 466 Pfam WD domain, G-beta repeat 95 121 IPR001680 GO:0005515
Gso17g2088 466 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Gso17g2088 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Gso17g2088 466 MobiDBLite consensus disorder prediction 1 20 - -
Gso17g2088 466 CDD WD40 95 419 - -
Gso17g2088 466 MobiDBLite consensus disorder prediction 448 466 - -
Gso17g2088 466 MobiDBLite consensus disorder prediction 28 42 - -
Gso17g2088 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 238 - -
Gso17g2088 466 SMART WD40_4 369 419 IPR001680 GO:0005515
Gso17g2088 466 SMART WD40_4 122 159 IPR001680 GO:0005515
Gso17g2088 466 SMART WD40_4 283 323 IPR001680 GO:0005515
Gso17g2088 466 SMART WD40_4 327 364 IPR001680 GO:0005515
Gso17g2088 466 SMART WD40_4 84 121 IPR001680 GO:0005515
Gso17g2088 466 SMART WD40_4 236 274 IPR001680 GO:0005515
Gso17g2088 466 SMART WD40_4 194 233 IPR001680 GO:0005515
Gso17g2088 466 Gene3D - 332 465 IPR015943 GO:0005515
Gso17g2088 466 Gene3D - 62 198 IPR015943 GO:0005515
Gso17g2088 466 Gene3D - 201 330 IPR015943 GO:0005515
Gso17g2088 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 273 IPR001680 GO:0005515
Gso17g2088 466 MobiDBLite consensus disorder prediction 422 437 - -
Gso17g2088 466 MobiDBLite consensus disorder prediction 28 82 - -
Gso17g2088 466 SUPERFAMILY WD40 repeat-like 88 424 IPR036322 GO:0005515
Gso17g2088 466 MobiDBLite consensus disorder prediction 422 466 - -
Gso17g2088 466 PANTHER PROTEIN JINGUBANG 10 441 - -
Gso17g2088 466 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Gso17g2088 466 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Gso17g2088 466 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Gso17g2088 466 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 441 IPR045182 -
Gso17g2088 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 364 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2088 Gso-Chr17 40559700 40562136 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1107 6 10824903 10829268 Gso17g2088 17 40559700 40562136 PCT