Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2086 ATGTTCACTAATTCACAAACGGTAATGCAAACCTTACTATCATCACCTTCGGCGGAGCCAGACCTCTCCTTAAACATAAGCCCTCCCTCTATTTCAGATTCCGAAGCAGCCAAAGATGTTGTTGGAAGCTTTGGAAAAGTGCTTTACAGTGATATTTGTTCAACTTCTGATTCGGGTAGTAGTGGAGGAAGTGATTTGAGCCACGAGTTCCACAACCTTGGTCATCATCATCATCGTGAGCCCACATTGAAGTTAGGCTTTGGAACCGTGGATTTGAATCCGCATCATCATCAAGTACAAGGTGTTCCAAGAAGCTTCAATCACCACCACCACCTCCTTCAACCTCACATCTATGGCCGCGATTTCAAACGAAGCGCAAGAGTAGTTAATGGGGTCAAAAGAAGCGTTAGAGCTCCTAGGATGAGATGGACCACAACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTTCTTGGTGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCATCAGTACTGCAGGTCATGGGCAGACAGATATTGGATTGAACCCAAGGCTAGGGATTAATGTTCATCTGCATGCACCTTCACCTATTTGTGACACACCGAATTTACCAGACCCAATTCAAAATTCACACAGGACACCGTGGCAATCATCAATAGAGACAAAAACAGACAACAGTAGACAAGAAGAACCCGAAATCGGTTTGACGTATTCTCACCTCAAGGGAAATAATAATAATGAAACCATGGTGGATGGGCACAACAATTCTGGAGGGTTGGATTCTTCCCCTTTGTCACGTTCCTCCGAGGCAATGCTTGACCTTGAATTCACCCTTGGAAGGCCCAATTGGCAAAAAGACCACCCCGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTAG 993 0.4491 MFTNSQTVMQTLLSSPSAEPDLSLNISPPSISDSEAAKDVVGSFGKVLYSDICSTSDSGSSGGSDLSHEFHNLGHHHHREPTLKLGFGTVDLNPHHHQVQGVPRSFNHHHHLLQPHIYGRDFKRSARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGISTAGHGQTDIGLNPRLGINVHLHAPSPICDTPNLPDPIQNSHRTPWQSSIETKTDNSRQEEPEIGLTYSHLKGNNNNETMVDGHNNSGGLDSSPLSRSSEAMLDLEFTLGRPNWQKDHPESSRELTLLKC* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2086 330 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 330 - -
Gso17g2086 330 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 330 IPR044847 GO:0000976|GO:0006355|GO:0010158
Gso17g2086 330 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 139 192 IPR006447 GO:0003677
Gso17g2086 330 Gene3D - 138 195 - -
Gso17g2086 330 MobiDBLite consensus disorder prediction 269 296 - -
Gso17g2086 330 MobiDBLite consensus disorder prediction 1 21 - -
Gso17g2086 330 MobiDBLite consensus disorder prediction 311 330 - -
Gso17g2086 330 Pfam Myb-like DNA-binding domain 140 191 IPR001005 -
Gso17g2086 330 SUPERFAMILY Homeodomain-like 136 193 IPR009057 -
Gso17g2086 330 MobiDBLite consensus disorder prediction 242 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2086 Gso-Chr17 40515902 40520927 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso17g2086 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0670 14 6713593 6718589 Gso17g2086 17 40515902 40520927 GST
Gso17g2086 17 40515902 40520927 Gso4g0312 4 2812832 2816421 PCT
Gso17g2086 17 40515902 40520927 Gso6g0294 6 2738092 2741138 PCT
Gso4g0312 4 2812832 2816421 Gso17g2086 17 40515902 40520927 PCT
Gso6g0294 6 2738092 2741138 Gso17g2086 17 40515902 40520927 PCT