Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2085 ATGGTGGGCCAAAATTGTGGTGGTTGCCGATCTTGGGAAGAGGACATTTACTGGTCCCACTTTCAGTTCCTCCACTTCGTCCAATTTCTCCGTGCCGATTATGATCAACACCTTGCACTTCCGAAAGCATTTTCAGATAATTTAAAGAAGAAGTTGCCGGAAAATGTGACCCTTAAGGGTCCTGGTGGTGTTGTGTGGAATATAGGGATGACTACTAGAGATGATACCTTGTACTTTGCGCATGGTTGGGAACAATTTGTGAAAGACCACTGTTTGAAAGAGAATGATTTCCTGGTCTTTAAGTACAATGGTGAATCTCAGTTTGATGTTTTAATATTCAATGGAGGGAGCTTGTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGTGGTCACACTGGAATTGAACATGCGGGTGGAAGTCTCAACAAGAAAAGGGACACGGATAATAATTCTTTGGAAGAAGGCAATATCCCTCCTTCAAATGCTGGTGTGGAATGTGCTTTGCATGAGAAATCTGTGCATGCTAATGGTACAAAGGAGCCAATAGATGTACCTCCTGAAACTCCTCCTACTGAAAAGACTTTCAATGCTGGTGTTGAATCTTCTGGTGTGGAGCAATTTACACCTGATGGAGGAGTCACTCTGGTAGCTGTTCCCTCTGAAACTGCTAATGGGAAAAGGATCAGGAACATTGTTTCTGCTGTTAAGCATGTCCAGACCAAGCGGAGGGGAAGACCAGCTAAAGTGCATGTTCGTGAGAGAACACTTGACTGGGTGGCTGCACTAGAAGCTTCTGAACCAATTTCTACGTCTAGAAGTGGAACATATGAGGTATACAAATCAAATAGAAGGCCTGTCACAGATGATGAGACTAAAATGATCGAGTCATTGGCCAAGGCAGCATGCACCGAAGACAGTATATACGTAGTCATGAAACCCTCGCATGTTTACAAGAGATTCTTCGTGTCAATGAGAGGTACATGGATAGGAAAACACATCTCTCCATCATCTCAAGATGTGATTTTGCGCATGGGTAAGGGTGAATGGATTGCCAGATACAGCTACAATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAACATTTTTCTTTGGATAATAACCTTGAAGAGGGTGATGCCTGTGTGTTTAAACCAGCTGGCCAAATGAACAACACTTTTGTCATTGATATGAGCATTTTCAGAGTTGTTCCGGAGACTGTTCCTCTCACTCCAATGTCTCGTGGAACTGGAAGAAGGGGTAGGAAGCAAGCAACAATGAAGTCTATTCAGACACAACTTAGTCCACCATGA 1320 0.4311 MVGQNCGGCRSWEEDIYWSHFQFLHFVQFLRADYDQHLALPKAFSDNLKKKLPENVTLKGPGGVVWNIGMTTRDDTLYFAHGWEQFVKDHCLKENDFLVFKYNGESQFDVLIFNGGSLCEKAGSYFVRKCGHTGIEHAGGSLNKKRDTDNNSLEEGNIPPSNAGVECALHEKSVHANGTKEPIDVPPETPPTEKTFNAGVESSGVEQFTPDGGVTLVAVPSETANGKRIRNIVSAVKHVQTKRRGRPAKVHVRERTLDWVAALEASEPISTSRSGTYEVYKSNRRPVTDDETKMIESLAKAACTEDSIYVVMKPSHVYKRFFVSMRGTWIGKHISPSSQDVILRMGKGEWIARYSYNNIRNNGGLTGGWKHFSLDNNLEEGDACVFKPAGQMNNTFVIDMSIFRVVPETVPLTPMSRGTGRRGRKQATMKSIQTQLSPP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2085 439 CDD B3_DNA 25 114 IPR003340 GO:0003677
Gso17g2085 439 Pfam B3 DNA binding domain 311 398 IPR003340 GO:0003677
Gso17g2085 439 Pfam B3 DNA binding domain 36 113 IPR003340 GO:0003677
Gso17g2085 439 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Gso17g2085 439 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 155 IPR044837 -
Gso17g2085 439 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 256 416 IPR044837 -
Gso17g2085 439 SUPERFAMILY DNA-binding pseudobarrel domain 308 398 IPR015300 -
Gso17g2085 439 MobiDBLite consensus disorder prediction 413 439 - -
Gso17g2085 439 Gene3D - 19 119 IPR015300 -
Gso17g2085 439 SMART B3_2 308 406 IPR003340 GO:0003677
Gso17g2085 439 SMART B3_2 26 116 IPR003340 GO:0003677
Gso17g2085 439 CDD B3_DNA 311 404 IPR003340 GO:0003677
Gso17g2085 439 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 256 416 - -
Gso17g2085 439 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 6 155 - -
Gso17g2085 439 SUPERFAMILY DNA-binding pseudobarrel domain 20 114 IPR015300 -
Gso17g2085 439 MobiDBLite consensus disorder prediction 137 160 - -
Gso17g2085 439 ProSiteProfiles B3 DNA-binding domain profile. 349 406 IPR003340 GO:0003677
Gso17g2085 439 Gene3D - 287 406 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2085 Gso-Chr17 40496672 40500439 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso17g2085 B3 1.8e-10 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0671 14 6741222 6744960 Gso17g2085 17 40496672 40500439 GST