Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2079 ATGCCTCTTTCTCGCAAACCGCTTTCTCCGTCGACGTCCACCGGAGCCAAGCAAATCCCCGGCGGCGATTTTGCTCCGGCGCGGCGATTGACCAGGCAGAGGAAGCTCCGGCACCTCACTAACCAAGACACTGGCTTCTTCCATTCCGATGAGTTTTCGTTTCTTCCGGGTTCGCCGGAGTTTCGCTCCCACGGCGGTTCCGACCACCGGTCGTTCTCTGCTCTGCCGCAACCGCTGCCGCTTCCCGAAGCTCCGTTGACTCGTCGAGCAAAGTCAATCAGCTCCGGTTGCGTACATCGTCGTCGCCTTTCATCTTCGGTAGAACAAGATGGCTTTACTATTTCGAGGAACACAGTGTATCAAGATGCAGTGACAGTGAACAGTTTTAGCTTCAATCCGAAGATTGAAGAGGGATCTCAAAACCATAAATTTTTGTCCAGGGTGTGCCCTGAAAATAACCTTCTGGATTCACATCCCTTACCCCTTCCACCTAGAGCTTCATCACCAAAGCAATTATCTGTTGTGCTGCATCAATCAAGAATCAAGCATCACGCTACTGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACTTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCCATGAAGGAGATCAGTTTAATTGCTGACGATCCTACATATGCTGAGTGCATTAAACAACTGGAACAGGAAATCAAAATTCTCGGTCAACTACACCATCCCAACATAGTGCAGTATTATGGAAGTGAAACAGTTGGCAATCATTTGTACATATATATGGAGTATGTCTACCCGGGATCAATAAGTAAATTTATGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATAAATCAGGCATTGTGAAGCTTGCAGATTTTGGGCTGGCGAAAATTCCTTCAGCCATGTTCAAGGTACTGCTAGAGTCCCCACCCATACCTGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTCTCCAAAGTGACCCTGCAGATCGACCATCTGCGGCAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGGTCAAGGTGTTATAGTTCGTTCACAATCATATACAAGAGGAGACCTAGGACAAGGAGGTAATTCAGCTAGTCCTAGAGACACTACCAAAAATAGACGTGGCATAATGCAAGCCTCCAATAGCACACTTATTCTTAACAAAATTCAGAAATCAATCGGCAATGCTAAGGAGTCTCATCATATTAGACCTTACCATCACTCTCATGTTCCTGAAGTGAACATTCTTCAATCTTCATTGGAATCCAGCACCCTCAATTGCATGTCTGTTGCAAATTCCAGAAACGTTTCCACCGTCACGAGAATGATCACGAACTTCTGA 1515 0.4548 MPLSRKPLSPSTSTGAKQIPGGDFAPARRLTRQRKLRHLTNQDTGFFHSDEFSFLPGSPEFRSHGGSDHRSFSALPQPLPLPEAPLTRRAKSISSGCVHRRRLSSSVEQDGFTISRNTVYQDAVTVNSFSFNPKIEEGSQNHKFLSRVCPENNLLDSHPLPLPPRASSPKQLSVVLHQSRIKHHATENLPSVKGRWQKGKLIGRGTFGSVFHATNIETGASCAMKEISLIADDPTYAECIKQLEQEIKILGQLHHPNIVQYYGSETVGNHLYIYMEYVYPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNKSGIVKLADFGLAKIPSAMFKVLLESPPIPETLSSVGKDFLQQCLQSDPADRPSAATLLKHAFVQNLHGQGVIVRSQSYTRGDLGQGGNSASPRDTTKNRRGIMQASNSTLILNKIQKSIGNAKESHHIRPYHHSHVPEVNILQSSLESSTLNCMSVANSRNVSTVTRMITNF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2079 504 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 12 124 - -
Gso17g2079 504 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 125 346 - -
Gso17g2079 504 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 346 499 - -
Gso17g2079 504 MobiDBLite consensus disorder prediction 410 429 - -
Gso17g2079 504 SMART serkin_6 196 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2079 504 MobiDBLite consensus disorder prediction 59 83 - -
Gso17g2079 504 Gene3D Transferase(Phosphotransferase) domain 1 352 412 - -
Gso17g2079 504 Gene3D Transferase(Phosphotransferase) domain 1 193 351 - -
Gso17g2079 504 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 12 124 - -
Gso17g2079 504 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 346 499 - -
Gso17g2079 504 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 125 346 - -
Gso17g2079 504 ProSitePatterns Protein kinases ATP-binding region signature. 202 225 IPR017441 GO:0005524
Gso17g2079 504 MobiDBLite consensus disorder prediction 1 18 - -
Gso17g2079 504 MobiDBLite consensus disorder prediction 1 26 - -
Gso17g2079 504 ProSiteProfiles Protein kinase domain profile. 196 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2079 504 SUPERFAMILY Protein kinase-like (PK-like) 187 402 IPR011009 -
Gso17g2079 504 Pfam Protein kinase domain 197 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2079 Gso-Chr17 40431038 40436780 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso17g2079 Pkinase 3e-40 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0685 14 6903766 6910647 Gso17g2079 17 40431038 40436780 GST
Gso17g2079 17 40431038 40436780 Gso6g0301 6 2791431 2797767 PCT
Gso6g0301 6 2791431 2797767 Gso17g2079 17 40431038 40436780 PCT