Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2078 ATGAACCTTACCCATTTCCCTCTCCATATATATAACTTCCCCGACAACCATCACTCTTCTAAGTGTCACACTCTAAAACACAAACAAACCCCAAAAAAAGAAAAGATGAAAGCAATGAAACGCTGCTCTTCATCATCTTCCTCTTCTTATTCTTCTGCTTCTGAGTCCACCCCACAAAGCAATCAAAATAAAAATAGTAATAACTTTTGCTACAAAATAAAAGGCCCATGGAGTGCCAAGGAGGATCGGATTCTGACCGGCCTCGTGGAGGCCCATGGCCCGAGAAACTGGGCCTCGATAAGCCGTCACATTAAGGGTCGGTCCGGGAAGTCCTGCCGGCTTCGGTGGTGTAACCAACTGAGTCCAACGGTGGAGCACCGACCCTTCTCCACGCGCGAGGACGAGGTTATATTACACGCGCACGCGCGGTTCGGGAACAAGTGGGCCACCATCGCGAGAATGCTACCGGGCCGAACCGACAATGCCGTCAAGAACCACTGGAACGCCACGCTCAAGCGGCGTCGTTTTGGTGCTGACGTGGTGGTGGAGGATGATCCGTTGACCGCGTTGACTCTGGCGCCGCCCGGGAGTGGTTGTTGTGGCCGTGGAGAGGAGCGGCGGGGAGTTTCGCCGGCGGGGTTTTGGGATGCGATGCGGGACGTGGTGGCGAGGGAAGTGAGAGGGTACGTGTCTTCCTCGTTTTCTGACAACTTGGCCTCTAATGAGGGATTATCCAAATATTAA 744 0.5323 MNLTHFPLHIYNFPDNHHSSKCHTLKHKQTPKKEKMKAMKRCSSSSSSSYSSASESTPQSNQNKNSNNFCYKIKGPWSAKEDRILTGLVEAHGPRNWASISRHIKGRSGKSCRLRWCNQLSPTVEHRPFSTREDEVILHAHARFGNKWATIARMLPGRTDNAVKNHWNATLKRRRFGADVVVEDDPLTALTLAPPGSGCCGRGEERRGVSPAGFWDAMRDVVAREVRGYVSSSFSDNLASNEGLSKY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2078 247 Pfam Myb-like DNA-binding domain 74 120 IPR001005 -
Gso17g2078 247 Pfam Myb-like DNA-binding domain 128 168 IPR001005 -
Gso17g2078 247 ProSiteProfiles Myb-like domain profile. 121 171 IPR001005 -
Gso17g2078 247 SMART sant 73 122 IPR001005 -
Gso17g2078 247 SMART sant 125 173 IPR001005 -
Gso17g2078 247 MobiDBLite consensus disorder prediction 21 35 - -
Gso17g2078 247 ProSiteProfiles Myb-like domain profile. 74 120 IPR001005 -
Gso17g2078 247 PANTHER MYB PROTEIN-RELATED 36 178 - -
Gso17g2078 247 PANTHER MYB PROTEIN-RELATED 181 226 - -
Gso17g2078 247 CDD SANT 128 171 IPR001005 -
Gso17g2078 247 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 36 178 - -
Gso17g2078 247 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 181 226 - -
Gso17g2078 247 MobiDBLite consensus disorder prediction 19 67 - -
Gso17g2078 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 175 IPR017930 -
Gso17g2078 247 Gene3D - 73 125 - -
Gso17g2078 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 124 IPR017930 -
Gso17g2078 247 Gene3D - 128 174 - -
Gso17g2078 247 MobiDBLite consensus disorder prediction 41 67 - -
Gso17g2078 247 CDD SANT 76 118 IPR001005 -
Gso17g2078 247 SUPERFAMILY Homeodomain-like 72 167 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2078 Gso-Chr17 40427503 40428457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2078 72 174 MYB Transcription Factor Family AT4G37260 73.786 6.48e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g2078 Myb_DNA-binding 5.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g2078 17 40427503 40428457 Gso4g0320 4 2887227 2888224 PCT
Gso17g2078 17 40427503 40428457 Gso6g0304 6 2818383 2819606 PCT
Gso4g0320 4 2887227 2888224 Gso17g2078 17 40427503 40428457 PCT
Gso6g0304 6 2818383 2819606 Gso17g2078 17 40427503 40428457 PCT