Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2074 ATGCAGCAATCAAACGGCTCTGATTCGACGACTACGATGGAGCAGAGCGCGCCGCCGCCTCCGAGGCAATCACCGGCGGTGGCGAGGCCGCAGCAGTGGGTGCCGATGCAGTACCCTGCGGCGGCGGCGATGGTAATGCCGCACCACATGTTGCCGCCTCAGCATTATGCGCCGCCGCCGTACGTGCCTTACCACCACCAGTACGCGGCGCAGCCCCAGCACCAGCACCAGAACGGATCCGGCGGTGAGAACAAAACCATCTGGATCGGCGATTTGCATCATTGGATGGACGAAAACTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTTTGCAAAATTATGCTGGAATTTTGATGCCCAATGCTGAACAACCATTCCGTCTGAACTGGGCAACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGACAATGAGAGAACCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCTAGCAGGCCAATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGCCATCAACAGGGTGGGCTGTCAAATGGCACAGCCAACCAATCTGAAGCAGATTCTACTAACACAACTATATTTGTTGGAGGACTGGACCCTAATGTTTCAGATGAAGATCTCAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGCTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAACGGTCCGTCTTTCTTGGGGTCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAGCCCTTGGACTGGGGCATATTACGGGGCCCCTATGTATGATGGTTATGGGTATGCATTGCCCCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGTGCTTACCCCCTTTATGGAGGCCACCAACAACAAGTAAGCTGA 1242 0.4919 MQQSNGSDSTTTMEQSAPPPPRQSPAVARPQQWVPMQYPAAAAMVMPHHMLPPQHYAPPPYVPYHHQYAAQPQHQHQNGSGGENKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNAEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGLSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2074 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Gso17g2074 413 SMART rrm1_1 86 161 IPR000504 GO:0003723
Gso17g2074 413 SMART rrm1_1 284 351 IPR000504 GO:0003723
Gso17g2074 413 SMART rrm1_1 179 253 IPR000504 GO:0003723
Gso17g2074 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 355 IPR000504 GO:0003723
Gso17g2074 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 165 IPR000504 GO:0003723
Gso17g2074 413 SUPERFAMILY RNA-binding domain, RBD 162 271 IPR035979 GO:0003676
Gso17g2074 413 MobiDBLite consensus disorder prediction 258 289 - -
Gso17g2074 413 CDD RRM3_NGR1_NAM8_like 282 353 - -
Gso17g2074 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 249 IPR000504 GO:0003723
Gso17g2074 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 348 IPR000504 GO:0003723
Gso17g2074 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 153 IPR000504 GO:0003723
Gso17g2074 413 MobiDBLite consensus disorder prediction 1 28 - -
Gso17g2074 413 Gene3D - 84 164 IPR012677 -
Gso17g2074 413 Gene3D - 271 384 IPR012677 -
Gso17g2074 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 412 - -
Gso17g2074 413 CDD RRM2_SECp43_like 177 256 - -
Gso17g2074 413 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 412 - -
Gso17g2074 413 Gene3D - 166 270 IPR012677 -
Gso17g2074 413 SUPERFAMILY RNA-binding domain, RBD 44 166 IPR035979 GO:0003676
Gso17g2074 413 CDD RRM1_SECp43_like 86 166 - -
Gso17g2074 413 SUPERFAMILY RNA-binding domain, RBD 272 383 IPR035979 GO:0003676
Gso17g2074 413 MobiDBLite consensus disorder prediction 1 17 - -
Gso17g2074 413 MobiDBLite consensus disorder prediction 253 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2074 Gso-Chr17 40371694 40375829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2074 55 363 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 6.08e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0690 14 6969226 6973328 Gso17g2074 17 40371694 40375829 GST
Gso17g2074 17 40371694 40375829 Gso4g0324 4 2936234 2942412 PCT
Gso17g2074 17 40371694 40375829 Gso6g0308 6 2873844 2880972 PCT
Gso4g0324 4 2936234 2942412 Gso17g2074 17 40371694 40375829 PCT
Gso6g0308 6 2873844 2880972 Gso17g2074 17 40371694 40375829 PCT