Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2062 ATGGCTGCCAGGAGTGATCACCAAACGGTTCCTCTTTCGGTGCTCCTGAGGCGCGAATTGGCGAACGAGAAAATTGAGAAGCCTGAGATTGCTCATGGTCAAGCGTGCCAGAGCAAGAAAGGCGAGGATTTGACGCTGCTCAAGACGGAATGCCAGAGGGTGGTGGGCGATGGGGTCTCTACATACTCAGTTTTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCGATTCCTCCAGATCTTAACAGAGATGAGTGGATAGCAGCCTTGCCCAGGGCTTTGGTTGCTGGTTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGGCCAAAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGATGGTGAGCTTTATTACTTGTCCGCAGATCACAGGCTAGAAACGAATGAAGAAGAGAGGGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGTTTGTGTCTCTCACGATCTATTGGAGATATGGATATTGGTGAATTTATTGTACCTGTCCCGTATGTAAAGCAAGTGAAGATGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGATGGTGTTTGGGATTCTCTACCTGCAGAAGTAGCCCTTGATTGTTGTCGTGGAATGCCAGCCGATGCTGCTGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATTGTAGTTGATATATTACCTCAGGAGAAACCACCTGTTTCTGCGCCACAAACAAAGAGGCCAGTAAAGGGAATGCTCAAGTCCATGTTTCGTAAAAAATCTTCTGAATCATCTTCTTATATTGACAAAGAGTACATGGAGCCAGATGTAGTAGAAGAATTGTACGAGGAAGGATCTGCCATGCTTTCAGAGAGGTTAGATACTAAATATCCAGTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTATGTCAAGTAGAGATAAAACCTGGAGAGGGTATTTCAATACACGAGGGTGCACCCGACTCTCGAAAATTTCGTCCCTGGGACGGACCTTTCCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGGTAGAATTAGCAGTGGAAGTGATGAATGA 1287 0.453 MAARSDHQTVPLSVLLRRELANEKIEKPEIAHGQACQSKKGEDLTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYSKENLLNNVLSAIPPDLNRDEWIAALPRALVAGFVKTDKDFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGELYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKMSTAGGRLVICSDGVWDSLPAEVALDCCRGMPADAAAPHIVKEAVQAKGLRDDTTCIVVDILPQEKPPVSAPQTKRPVKGMLKSMFRKKSSESSSYIDKEYMEPDVVEELYEEGSAMLSERLDTKYPVCNMFKLFMCAVCQVEIKPGEGISIHEGAPDSRKFRPWDGPFLCSSCQEKKEAMEGKRSSGRISSGSDE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2062 428 SMART PP2C_SIG_2 46 293 IPR001932 -
Gso17g2062 428 MobiDBLite consensus disorder prediction 409 428 - -
Gso17g2062 428 Gene3D - 30 299 IPR036457 -
Gso17g2062 428 Pfam Protein phosphatase 2C 57 276 IPR001932 -
Gso17g2062 428 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Gso17g2062 428 SUPERFAMILY PP2C-like 39 293 IPR036457 -
Gso17g2062 428 SMART PP2C_4 21 291 IPR001932 -
Gso17g2062 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 423 - -
Gso17g2062 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
Gso17g2062 428 CDD PP2Cc 62 293 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2062 Gso-Chr17 40249124 40254751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2062 1 427 PP2C-type Phosphatase Gene Family AT1G47380 78.271 0.0 713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0702 14 7099635 7105285 Gso17g2062 17 40249124 40254751 GST
Gso17g2062 17 40249124 40254751 Gso4g0333 4 3003748 3008074 PCT
Gso17g2062 17 40249124 40254751 Gso6g0317 6 2943544 2948586 PCT
Gso4g0333 4 3003748 3008074 Gso17g2062 17 40249124 40254751 PCT
Gso6g0317 6 2943544 2948586 Gso17g2062 17 40249124 40254751 PCT