Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2054 ATGGACGGTTACGACGGCACCGTCAGGCTCGGTGCCATCAACCTCAAGCACGATCGCGCCGCCGATTTCGACTCCGCCACCGCCGCCCCCGACGTCTCCGTCTCCTCTCCGGTCACGCGCCAGAAAGCCGCTGCCGCCAAACAATTCATCGAGAATCACTATAAAAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGAGCACTTCAGAGGAAAGTGCAAGAATCTCAGGTATCGGCTGAGGAGCAGGAGGAAATGATGAGGAACTTGGAGCGCCGAGAAACTGAGTACATGAGGCTTCAGAGACGTAAAATTGGAATCGATGACTTTGAGCAGTTAACTGTAATTGGGAAAGGTGCTTTCGGTGAGGTGAGGTTATGTCGTGCAAAAGATACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCGGAGATGCTTAGTCGCGGACAGGTGGAACATGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTCAAACTTCATTATTCATTCCAAGATTCTGATTTCCTCTATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGGGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTAGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCATCAATTTTATTGGAAAATGATGATCTTACCAGTCAAGAATCCACTAGTGAAACTGAAGGATATTCTGTCTCTCCTTGGTTGATGCCAAAGGAACAATTACAGCAGTGGAAACGTAATCGACGTGCATTGGCATATTCAACTGTTGGAACTCTTGATTACATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCGATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCCGACGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAAAACGTGCCTGAAATTCCCGGACGAACCCAAGATATCAGCTGAAGCAAAGGATCTGATCTGTCGCTTACTATGTGATGTTGACTCAAGACTAGGAACCAGAGGAATCGAAGAAATAAAGGCTCATCCATGGTTCAAGGGTGTTCAGTGGGACATGCTTTATGAATCAGAAGCAGCATATAAACCTACGGTCACTGGGGACTTGGATACTCAAAATTTTGAGAAGTTTCCTGAAGTCGATGGCCCACCATCTGTAACAGCAACTGTTGGACCTTGGCGGAAAATGCTGACATCCAAAGATAACAATTTCATAGGATATACTTTTAAGAAGTCAGACATCCTTAAATCACTTGAAAGTTCAGATGCAGATATCAGAGTAAACGGATCATCGAAAACCCCTTCCTTGATTACCTTGTTAGGTCGGATTGATTTGCAAGACACCATCATACCAGAAAGTGAGCAGAAGCCAGAAGCTTGA 1578 0.4392 MDGYDGTVRLGAINLKHDRAADFDSATAAPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQVSAEEQEEMMRNLERRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKDTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLENDDLTSQESTSETEGYSVSPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPDEPKISAEAKDLICRLLCDVDSRLGTRGIEEIKAHPWFKGVQWDMLYESEAAYKPTVTGDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILKSLESSDADIRVNGSSKTPSLITLLGRIDLQDTIIPESEQKPEA* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2054 525 CDD STKc_NDR_like 110 476 - -
Gso17g2054 525 Gene3D Phosphorylase Kinase; domain 1 74 195 - -
Gso17g2054 525 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso17g2054 525 Gene3D Transferase(Phosphotransferase) domain 1 196 263 - -
Gso17g2054 525 ProSiteProfiles Protein kinase domain profile. 112 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2054 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 511 - -
Gso17g2054 525 SMART pkinase_C_6 413 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso17g2054 525 Coils Coil 68 105 - -
Gso17g2054 525 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 511 - -
Gso17g2054 525 Gene3D Transferase(Phosphotransferase) domain 1 311 430 - -
Gso17g2054 525 Pfam Protein kinase C terminal domain 431 475 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gso17g2054 525 Pfam Protein kinase domain 112 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2054 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Gso17g2054 525 Gene3D Phosphorylase Kinase; domain 1 431 441 - -
Gso17g2054 525 SMART serkin_6 112 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2054 525 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Gso17g2054 525 SUPERFAMILY Protein kinase-like (PK-like) 87 464 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2054 Gso-Chr17 40104333 40110878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2054 1 513 AGC Kinase Gene Family AT5G09890 78.682 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gso17g2054 Pkinase 4.8e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0712 14 7238603 7245550 Gso17g2054 17 40104333 40110878 GST