Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2053 ATGGAAGAAGGGTCGGAGTGGATCATCACTGATGATGTAGCTACTCATCTTGATTCATTGGATTCTTCTATCATGTTTAACATGCAAGGTATTATGGGGTGCAAAACCAACTTCATGGAAACGAGTGAAACGTTCAAACGTTTCAAATTTGTGTTTGGGAGGAAGTTCGGATTGGAATACCCTGAAGAGGAAAACTCCCAGTTACCAAGTTACAAAGAGTTAGCATATTGGTCATTGAGGTATGATTTCAGTGAGAACCTTGTTGAGCATGTGGTGGTGAACACAACAACAACAATTAGTGTTGGTTCTGCTAGAGTGCTTTTAGGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGCTTACAATAGCACTGAAGGAAGGCCTTTGAAAATTGGGGTTCCAGCAATTGATCCATGCCCTCAGTTTGTGAATGTGAGTCATGATAAGAGACTGAATGAAACCCAATTCACAGGTTTCTCTATCAATGTCTTTGAATCAGTTGTTAAGCGCCGGCCTTATCACCTGCCTTTTGTTTTTGTTCCATTCTATGGCTCTTATGATCAAATAGTTGAACAAGTGAACAATAAGGACCTTGATGCTGCTGTTGGAGATATTCAAGTGGTGGAACATAGATATGCATTTGCGGAATTCTCTCATCCGTATGTTGAATCTGGTATAGCCATGGTGGTGAAAGTAAAGGCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTTACAAAAGAAATGTGGATGTTGATGGCGGTGATGCACCTGTTCATAGCATTTGTAATATGGTTCATTGAAGGTGAAAACAATTCAGAGTTGAAGAGTCTTCGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTTGTACACAGAGAACCTGTGAAGAGCAACTTGGCTCGAGCTGTGCTAGCACCTTGGTTATTTGCTATTCTCATAGTGACTTCAAGTTTTACTGCGAGTCTTTCATCCATGATGACAGTGTCCCATCTTGAACCATCTGTGCCAGATATACAAACACTGCTGGGGACAAACGCAATCATAGGCTGCAACAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAATTCAACCCTGAGATTTGA 1140 0.4123 MEEGSEWIITDDVATHLDSLDSSIMFNMQGIMGCKTNFMETSETFKRFKFVFGRKFGLEYPEEENSQLPSYKELAYWSLRYDFSENLVEHVVVNTTTTISVGSARVLLGSVDWPGGLKTVPKGWAYNSTEGRPLKIGVPAIDPCPQFVNVSHDKRLNETQFTGFSINVFESVVKRRPYHLPFVFVPFYGSYDQIVEQVNNKDLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKADRSKETWMFMDAFTKEMWMLMAVMHLFIAFVIWFIEGENNSELKSLRAILWFSVTTLFFVHREPVKSNLARAVLAPWLFAILIVTSSFTASLSSMMTVSHLEPSVPDIQTLLGTNAIIGCNKNTFLVHYLVDELKFNPEI* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2053 379 Pfam Bacterial extracellular solute-binding proteins, family 3 158 245 IPR001638 -
Gso17g2053 379 Gene3D - 229 238 - -
Gso17g2053 379 Gene3D - 157 228 - -
Gso17g2053 379 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 70 - -
Gso17g2053 379 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 72 378 - -
Gso17g2053 379 Gene3D - 1 135 - -
Gso17g2053 379 SUPERFAMILY Periplasmic binding protein-like II 111 372 - -
Gso17g2053 379 Gene3D - 245 372 - -
Gso17g2053 379 Pfam Ligand-gated ion channel 254 354 IPR001320 GO:0015276|GO:0016020
Gso17g2053 379 SMART GluR_14 135 319 IPR001320 GO:0015276|GO:0016020
Gso17g2053 379 PANTHER GLUTAMATE RECEPTOR 1 70 - -
Gso17g2053 379 PANTHER GLUTAMATE RECEPTOR 72 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2053 Gso-Chr17 40098126 40100279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2053 87 369 Ion Channels AT5G11180 34.797 2.82e-55 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0713 14 7247837 7255679 Gso17g2053 17 40098126 40100279 GST