Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2049 ATGGCTCTTCTACTGGACAACTGTGAAAGCATTTTGTTGTCTTTGGACACACACAAATCGGTTCCTGCACCTTTTCTTACAAAAACATACCAACTTGTAGAGGACCCTTCCACCGACCACATAGTCTCTTGGGGCGAAGGCGACACCACCTTCGTCGTTTGGAGACCCCCCGAATTCGCTAGGGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGAAAGATTGTGCCTGATAGATGGGAGTTCGCGAATGAGTTCTTCAAGAAAGGAGCGAAGAACTTGCTGTGCGAGATCCACAGAAGGAAAACCCCTCACCAGCATCATCAAGAAGTACAAGCCATGAATAACCATCACCACCACTATCATCATCATCAGTTTGGACTCAACGTTCCTCCATTCTTTCCCTTCCACAATAGCAGACTCAGTATTTCCCCTCCTCATGACTCGGACGAGTTAATAATACCCAATTGGTGTGACTCGCCACCAAGAGGAGTTGCAAGTGTAAACAACAACAACAACAACAATAACAACTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCATGTCGGAGATCGAACACATGAAGAAGCTTTACAACGGCATTATCTACTTCGTTCAGAACCATGTCAAGCCCGTGGCTCCAAGCAACAACAACACTTTCCCTTCTTTTCTACTCTGCAGTAATAACATTAATAGCAATAGCAACAACAACACATCATCACAACCACAAGCCTCTCCTATGAGCAATGTTTCAACGGTGCAAAGGCAAGTGAAGCCATTTCTGGGGTGTTACTCCAACAACACCAAGCAAGCGCGTGCTGTGAACTCTTCTCCCACTAACAGTTCCATAACCATTGTTGAAGAAGAGGCTAGCAGTAACAGCTGCAAGACGAAGCTTTTTGGTGTGTCTCTCCAATCCAAGAAAAGGGTGCACCCTGATGAGTACGGATCTAACTATATTCTTCAAAGCTCCCAAACGAATAATAAGGCGCGTTTGGTTTTGGAAAATGATGAACTATTAGGCTTGAATCTTATGCCCCCTTCAACTTGTTAA 1125 0.4471 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVEDPSTDHIVSWGEGDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGAKNLLCEIHRRKTPHQHHQEVQAMNNHHHHYHHHQFGLNVPPFFPFHNSRLSISPPHDSDELIIPNWCDSPPRGVASVNNNNNNNNNYNTVTALSEDNERLRRSNNMLMSEIEHMKKLYNGIIYFVQNHVKPVAPSNNNTFPSFLLCSNNINSNSNNNTSSQPQASPMSNVSTVQRQVKPFLGCYSNNTKQARAVNSSPTNSSITIVEEEASSNSCKTKLFGVSLQSKKRVHPDEYGSNYILQSSQTNNKARLVLENDELLGLNLMPPSTC* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2049 374 PANTHER BNAC06G00310D PROTEIN 273 373 - -
Gso17g2049 374 PANTHER BNAC06G00310D PROTEIN 12 241 - -
Gso17g2049 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 241 IPR027725 -
Gso17g2049 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 273 373 IPR027725 -
Gso17g2049 374 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g2049 374 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g2049 374 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g2049 374 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gso17g2049 374 Gene3D - 17 116 IPR036388 -
Gso17g2049 374 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g2049 374 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g2049 374 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g2049 374 Coils Coil 194 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2049 Gso-Chr17 40048502 40050416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2049 1 373 HSF AT1G46264 51.399 1.01e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso17g2049 HSF_DNA-bind 1.7e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0718 14 7312610 7314539 Gso17g2049 17 40048502 40050416 GST
Gso17g2049 17 40048502 40050416 Gso4g0349 4 3132554 3134203 PCT
Gso17g2049 17 40048502 40050416 Gso6g0332 6 3078273 3079887 PCT
Gso4g0349 4 3132554 3134203 Gso17g2049 17 40048502 40050416 PCT
Gso6g0332 6 3078273 3079887 Gso17g2049 17 40048502 40050416 PCT