Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2047 ATGGCTGGTGACGTAGGAAGAGCCTTGCCTCCTCCTGATTCAGAAGAATTCTCAACCTTGTTCAGCCAACTCCTCCATAATTCTCCCCCACTAGGAATGGACCCCAATCATTCACCTCCTGATTTCACCCCACACAACAACACCATCGACATCAACATCAACAACAACATCATCAACAACAACAACAACAACAACAACAACAACCCTGTTCCTTCCTCTCCCTCAAATTTCAATTTGTCTGACCCCCATCATTACATCCCTGCCTCTGATGCCACCACCTTCAAACAACACACCCCTGATTTCACTTCTTTTTCTGTTGAGAAGAGTGTGGAGGCATCGAAACCTGTCCCACCACCACGTTCTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGGACTAAGACCTATGATAATGTCTCAGACTGGATTGAACCTTGATGGGAGTAATGGATTTCATAATTCTACCAGTGCAATTGCCTCATCTTCAAATGATGAAAGCTTAGTGCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAAATCAGTCTATTGGTGTACCCTCAGTGACAAACATAGCAACTTCGGATACCTCATCCACTTTTCATCCCTCTATTAAGGATGCACTCTACGGCAACATGCCACAACTGTTTATGGATACAACAACGATGGGAAAACCCTCTCCAGATGTGTCTTAA 903 0.4286 MAGDVGRALPPPDSEEFSTLFSQLLHNSPPLGMDPNHSPPDFTPHNNTIDININNNIINNNNNNNNNNPVPSSPSNFNLSDPHHYIPASDATTFKQHTPDFTSFSVEKSVEASKPVPPPRSSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMIMSQTGLNLDGSNGFHNSTSAIASSSNDESLVRHAFSFPKQCSISNQSIGVPSVTNIATSDTSSTFHPSIKDALYGNMPQLFMDTTTMGKPSPDVS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2047 300 MobiDBLite consensus disorder prediction 105 140 - -
Gso17g2047 300 MobiDBLite consensus disorder prediction 40 82 - -
Gso17g2047 300 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 95 276 IPR031066 -
Gso17g2047 300 CDD bHLH_AtPIF_like 129 190 - -
Gso17g2047 300 Pfam Helix-loop-helix DNA-binding domain 132 178 IPR011598 GO:0046983
Gso17g2047 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Gso17g2047 300 PANTHER TRANSCRIPTION FACTOR SPATULA 95 276 - -
Gso17g2047 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 188 IPR036638 GO:0046983
Gso17g2047 300 SMART finulus 134 183 IPR011598 GO:0046983
Gso17g2047 300 MobiDBLite consensus disorder prediction 126 140 - -
Gso17g2047 300 MobiDBLite consensus disorder prediction 25 84 - -
Gso17g2047 300 Gene3D - 123 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2047 Gso-Chr17 39999883 40003519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2047 127 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 67.568 1.44e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g2047 HLH 3.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0720 14 7371698 7375159 Gso17g2047 17 39999883 40003519 GST